Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vium3638g00001 | ATGGCCAAGGGCACCGATTCCGACGAGTTCGTGTTGCTTTCTAGGGTCCGGACTGGTCTCAAGAGGGAGTTCGCGTTCGCAATGAAGGCCCAATCTGAGATCTGCGGCGCTTCTCTGGGCCGAACGCGGGCCAGCAAGAACCGGCCTGACCCTCCTGTTCAGACGGCATCTGCCCGGAAACGGTCCAGGAAGACCGTCGAGCCGAAAACGTCGGAGGACGTCTTGAGCGAGGAAGAGGCTAAGAGCGACGTGGTGGATCTTCAGAGCGATGATGAGCCGAAGAATAATCATGCGGGAGAGTCAGAGTCTCCGGCAATGTTGGTTTGTGAAGAGGAAACGAAGAGTGATGTGGCCATGGAAAATATTATGGGCGAAGAGGAGCCGAAGGTGTTGGAAACTGTTATCTGCGAAGAGGAGCCTAAGGTGTTGGAAACTGTTATCTGCGAAGAGGAGCCTAAGGTGTTGGAAACTGTTATCTGCGAAGAGGAGCCGAAGGTGTTGGAAACTGTTATCAGCGAGGAGGAACCGAAGGCGTTAGAAATTGTCGTGGGCGAAGAGGAACCGAAGGTGTTGGATAGTGGTGTCAATGAGGATGAGCCTGTTGTGGCTGAGACGTTGAAGGAAGAGGTTGTGGATGAGACGGCACAACCTCTTGGCGAAATTAATGAGGAATCGGAGAAGGGTGTTTCGGGAGATAAGGTTCCTGGTGGGGAAACCCTTGTTTTGGAGAATGATGATGATAAGGGGAAGAAGTATACGAAGAGAACGAAAAAGTGGATGGAGAGGCTTCCGACTGTGAGAAGGTTTACGCGGTCGGCATTGAAGGAAAAACCCGAGGAAGCAAATGACGAGAAAAATGTTGGTGCGGTTGGAGTTGATGATGTTATTAAGAGGGAATCAGAAACTGAGGCTTCGGTGTTAATGACCACTCCTATTTCGGGAAGATTTTCGAATTCTAGGTTGAGGAAATTTCCTTCCAAGTTGAAGGATCTTCTGGCTACGGGCATTCTTGACGGATTGACAGTGAGGTACATGAAAGGATCAAAGGCTCGAAAGAATGGAGAAACAGCGCTTCAAGGAATGATTCGAAACTCTGGGATTCTGTGCTTTTGTGAGAGTTGCATGGGGATTGAGGTGGTCACGCCCACTGTGTTTGAGCTGCATGCTGGCAGTGCAAATAAACGTCCCCCGGAGTATATTTACATGGATTGTGGGAATGGTGGAAATAACCTCCGTGATGTCATGAATGCCTGCTGCGATTTGCCATTGGAGTCAGTGGAGGAAGCCGTCCAAAAACTACTTGGTGGCTTCACTATGAACAAATCTTCGATCTGTTTACACTGCCGAGGAGCATGCAAGGGTGTGTCAAAGCTCGTATGCGATTGTTGCTTAGCAAGTCCCCCTCAAATAGCCACAGCATGTAGCAAAAAGATTTCATCACCGGTTCAACCAAGATCACCAGAGCAAGTAATGGTTCAAAAATCATTAGACAATGAGATGCAGCCAAATTCATTAGACAATGGCGTGCAGCCAGACTCGCTAAATAATTGCTTGGCGCCAAACTCATTAACCAATGAGATGAAGCCAAATTTGTTACATAGTGGGATGAAGCTTAATTCATCAAACAGTGTGATGAAGCCAAATTCATTAAAGAATGGGATGAAGCACAGTGCATCTCGTGGTAAGAGTCAGGGAAGACTAACTAGGAAGGATCTGCGCTTGCATAAGTTGGTATTTGAAGCAGATGTTTTGCCTGATGGAACTGAAGTAGCCTACTATGCTCATGGAGAGAAACTGTTGGTTGGTTACAAAAAGGGATATGCGATATTTTGTACCTGCTGCAACAGTGAGGTCAGTGCTTCTCAGTTTGAAGCTCATGCTGGTTGGGCATCTCGACGAAAGCCTTACCTGCACATTTACACATCTAATGGAATCTCACTCCATGAGTTGTCCATCTCTTTATCAAAAGACCGGAGATTTTCCAACAATGATAATGATGATCTCTGCATCATATGTGAAGATGGAGGGGATCTTTTGTGTTGTGATGGATGCCCTAGAGCTTTTCACATAGACTGTGTCCCTTTGCCATGCATTCCCAGTGGTACTTGGTATTGTAAGTATTGCCAGAATGTTTTTCAGAAAGATAGGCAGGGGCAACATAATGTGAATGCTCTGGCAGCTGGAAGGATTGAAGGTACTGATATTTTGGAACAGATGAACCCAAGATGTATTCGTGTTGTCAGAACTGTAGAAGTTGACCATGGTGGATGTGCCTTGTGCAGTCGTCACAATTTCAGTAAAAGCTTTGGTCCTCGGACAGTAATTATTTGTGATCAGTGTGAGAAAGAATATCATGTTGGATGCTTGAAGGATCATAATATGCAGAACCTTGAGGAATTGCCTGAGGGGAATTGGTTTTGTGGCACATCTTGCAATCAAATTCATTCTGCTCTGGCGGATTTGGCAGCTTGTGGGGAAAAGAGTTTCCCAGATTCCCTTCTAAGTTTGATTAAAAAGAAGCATGAAGAGAAAAGTGTAGACATTCAAGGTGACCTTGATGTTAAATGGAGGGTTATAAATTGGAAGCTTGATGATTCTGTCGAGAATAGGAAAAGGCTTTCAAAGGCTGTTGCTATCTTCCATGAAAGGTTTGATCCTATAGTTGATTCAACATCGGGCCGAGATTTCATTCCGACAATGTTGTTTGGAAGGAACATTCGGGGTCAAGACTTTAGTGGGATGTACTGTGCAGTGCTTACTGTCAATGGAGATATTGTGTGCGCTGGAGTATTTCGTGTCTTTGGGTCAGAAATTGCTGAGCTTCCATTGGTGGCAACAACTTCTGATCAACAAGGACAGGGTTATTTTCAGTGTCTATTTTCTTGTATCGAGACATTACTTGGTTCTTTGAATGTGAAAAACCTTGTCCTACCAGCTGCCGATGAAGCTGAATCGATATGGACCGGTAAATTTGGGTTTACAAAGCTAGCTCAAGATGAGATAAACAAGTATAAGAAATTTTATCGCATGATGATATTTCAAGGGACGTCGGTGTTACATAAGCCTGTTCCTGCGCTCTGA | 3081 | 0.4537 | MAKGTDSDEFVLLSRVRTGLKREFAFAMKAQSEICGASLGRTRASKNRPDPPVQTASARKRSRKTVEPKTSEDVLSEEEAKSDVVDLQSDDEPKNNHAGESESPAMLVCEEETKSDVAMENIMGEEEPKVLETVICEEEPKVLETVICEEEPKVLETVICEEEPKVLETVISEEEPKALEIVVGEEEPKVLDSGVNEDEPVVAETLKEEVVDETAQPLGEINEESEKGVSGDKVPGGETLVLENDDDKGKKYTKRTKKWMERLPTVRRFTRSALKEKPEEANDEKNVGAVGVDDVIKRESETEASVLMTTPISGRFSNSRLRKFPSKLKDLLATGILDGLTVRYMKGSKARKNGETALQGMIRNSGILCFCESCMGIEVVTPTVFELHAGSANKRPPEYIYMDCGNGGNNLRDVMNACCDLPLESVEEAVQKLLGGFTMNKSSICLHCRGACKGVSKLVCDCCLASPPQIATACSKKISSPVQPRSPEQVMVQKSLDNEMQPNSLDNGVQPDSLNNCLAPNSLTNEMKPNLLHSGMKLNSSNSVMKPNSLKNGMKHSASRGKSQGRLTRKDLRLHKLVFEADVLPDGTEVAYYAHGEKLLVGYKKGYAIFCTCCNSEVSASQFEAHAGWASRRKPYLHIYTSNGISLHELSISLSKDRRFSNNDNDDLCIICEDGGDLLCCDGCPRAFHIDCVPLPCIPSGTWYCKYCQNVFQKDRQGQHNVNALAAGRIEGTDILEQMNPRCIRVVRTVEVDHGGCALCSRHNFSKSFGPRTVIICDQCEKEYHVGCLKDHNMQNLEELPEGNWFCGTSCNQIHSALADLAACGEKSFPDSLLSLIKKKHEEKSVDIQGDLDVKWRVINWKLDDSVENRKRLSKAVAIFHERFDPIVDSTSGRDFIPTMLFGRNIRGQDFSGMYCAVLTVNGDIVCAGVFRVFGSEIAELPLVATTSDQQGQGYFQCLFSCIETLLGSLNVKNLVLPAADEAESIWTGKFGFTKLAQDEINKYKKFYRMMIFQGTSVLHKPVPAL | 1026 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vium3638g00001 | 1026 | ProSitePatterns | Zinc finger PHD-type signature. | 669 | 708 | IPR019786 | - | |
| Vium3638g00001 | 1026 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 660 | 726 | IPR013083 | - | |
| Vium3638g00001 | 1026 | Pfam | Tify domain binding domain | 360 | 418 | IPR032308 | - | |
| Vium3638g00001 | 1026 | Pfam | Tify domain binding domain | 603 | 650 | IPR032308 | - | |
| Vium3638g00001 | 1026 | Gene3D | - | 852 | 1021 | - | - | |
| Vium3638g00001 | 1026 | FunFam | Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain | 655 | 732 | - | - | |
| Vium3638g00001 | 1026 | MobiDBLite | consensus disorder prediction | 60 | 98 | - | - | |
| Vium3638g00001 | 1026 | MobiDBLite | consensus disorder prediction | 224 | 244 | - | - | |
| Vium3638g00001 | 1026 | MobiDBLite | consensus disorder prediction | 37 | 105 | - | - | |
| Vium3638g00001 | 1026 | SUPERFAMILY | FYVE/PHD zinc finger | 656 | 710 | IPR011011 | - | |
| Vium3638g00001 | 1026 | FunFam | PHD finger family protein | 853 | 1022 | - | - | |
| Vium3638g00001 | 1026 | ProSiteProfiles | Zinc finger PHD-type profile. | 666 | 711 | IPR019787 | - | |
| Vium3638g00001 | 1026 | SUPERFAMILY | FYVE/PHD zinc finger | 750 | 808 | IPR011011 | - | |
| Vium3638g00001 | 1026 | SMART | PHD_3 | 756 | 812 | IPR001965 | - | |
| Vium3638g00001 | 1026 | SMART | PHD_3 | 668 | 709 | IPR001965 | - | |
| Vium3638g00001 | 1026 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 751 | 814 | IPR013083 | - | |
| Vium3638g00001 | 1026 | PANTHER | AUTOIMMUNE REGULATOR | 115 | 1023 | - | - | |
| Vium3638g00001 | 1026 | SUPERFAMILY | Acyl-CoA N-acyltransferases (Nat) | 912 | 996 | IPR016181 | - | |
| Vium3638g00001 | 1026 | CDD | PHD1_AIRE | 668 | 708 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vium3638g00001 | Vium-Chr3638 | 26881 | 37735 | Dispersed/Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vium3638g00001 | 249 | 1023 | PHD Transcription Factor Family | AT2G36720 | 43.494 | 0.0 | 639 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vium3638g00001 | - | - | var:108333944 | 1838.93 |