Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3637g00002 ATGGTTATTGAGATCGTTGTTATGTATCCCATCCAAGATAGACCCTATCGTCCTGGAATCGATAACCTCCTTGTACTTCTGATCGGAGGAATTCCAATTGCCATGCCCACGGTTTTGTCTGTGACCATGGCCATTGGTTCTCACAGGCTATCTCAGCAGGGGGCTATCACAAAGAGGATGACAGCCATTGAAGAAATGGCAGGCATGGATGTGCTTTGCAGTGATAAGACTGGGACTCTGACATTGAATAAGCTTACTGTTGACAAAAATCTAGTTGAGGTTTTTGCAAAAGGAGTGGATCCAGATACTGTTATTTTGATGGCTGCTCGAGCTTCGAGGCTTGAGAATCAAGATGCAATTGATACAGCCATAGTTGGGATGTTAGCTGATCCAAAGGAGGCACGCGCTGGTATACAAGAAATACACTTTCTTCCTTTCAATCCTACTGACAAGCGGACGGCATTGACCTATCTTGATCAAGATGGTAAAATGCATAGAGTAAGCAAAGGTGCACCAGAACAGATCCTGAATCTTGCACACAATAAGGCAGAGATTGAACGTAGAGTTCATTCAGTGATTGACAAGTTTGCAGAGCGTGGTTTACGATCTCTTGCTGTAGCATACCAAGAAGTTCCAGATGGAAGGAAAGAGAGTGCTGGAGGTCCATGGCAATTTGTTGGCCTTTTGTCTCTCTTTGACCCACCAAGGCACGATAGTGCGGAAACCATACGTAGAGCACTAAACCTTGGAGTAAATGTCAAAATGATTACAGGGGATCAGCTAGCTATAGGAAAGGAAACAGGTCGTCGCTTGGGAATGGGTACCAATATGTATCCTTCATCAGCTTTGCTTGGGCAGGACAAGGATGAATCCATTGCTGCCTTACCAATTGATGAACTAATAGAAAAGGCTGATGGATTTGCTGGTGTATTTCCTGAGCACAAGTATGAGATTGTGAAACGCTTGCAAGCTAGGAAACACATTTGTGGAATGACTGGTGATGGAGTGAATGATGCACCTGCTCTCAAGAAGGCAGACATTGGTATAGCTGTTGCTGATGCTACTGATGCAGCTCGCAGTGCATCTGATATAGTTCTAACAGAACCGGGCCTTAGTGTTATTATTAGTGCTGTTTTGACCAGCCGAGCTATCTTTCAGAGAATGAAAAATTATACAATTTATGCCGTCTCAATTACAATTCGTATTGTGCTTGGTTTCATGTTGCTGGCTCTTATATGGAAGTTTGACTTTCCACCCTTTATGGTGCTTATTATTGCCATCCTGAACGATGGAACTATTATGACAATTTCAAAAGATCGTGTAAAACCATCTCCTCTGCCAGATAGCTGGAAGCTAGCTGAGATATTTACTACTGGTGTTGTGCTTGGAAGTTACTTGGCGATGATGACAGTCATATTCTTTTGGGCAGCATACAAAACAGATTTTTTCCCACGAGTTTTTGGAGTCGCAACTCTTGAAAAAACTGCTCATGATGATTTTAGAAAACTTGCGTCTGCAATCTATCTTCAAGTGAGCACTATTAGTCAGGCTCTTATATTTGTAACTCGATCACGAGGTTGGTCATATGTTGAGCGTCCTGGTTTATTGCTGGTGGTTGCTTTTATAATTGCTCAGCTGATTGCCACTTTGATTGCAGTATATGCCAGCTGGAGCTTTGCTGCAATTGAAGGAATAGGTTGGGGATGGGCTGGTGTTATATGGTTATATAACATAATATTCTACTTCCCACTTGATATCATTAAATTTTTAATTCGCTATGCTCTAAGCGGTAGGGCATGGGATCTTGTCATTGAGCAAAGGATTGCATTCACAAGGCAAAAGGACTTTGGAAAGGAACAGCGTGAACTTCAATGGGCACATGCTCAAAGAACATTGCATGGTCTACAACCACCTGACAGCAAGTTCACTGAGCGCACACACGTCAGTGAACTCAATCAAATGGCCGAAGAAGCTAAAAGGAGAGCTGAAATTGCCAGGTTGAGAGAACTTCATACACTAAAAGGTCATGTAGAATCAGTTGTGAGATTGAAGGGACTTGACATAGACACAATTCAGCAAGCATACACAGTTTGA 2094 0.426 MVIEIVVMYPIQDRPYRPGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDKNLVEVFAKGVDPDTVILMAARASRLENQDAIDTAIVGMLADPKEARAGIQEIHFLPFNPTDKRTALTYLDQDGKMHRVSKGAPEQILNLAHNKAEIERRVHSVIDKFAERGLRSLAVAYQEVPDGRKESAGGPWQFVGLLSLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSALLGQDKDESIAALPIDELIEKADGFAGVFPEHKYEIVKRLQARKHICGMTGDGVNDAPALKKADIGIAVADATDAARSASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVLGFMLLALIWKFDFPPFMVLIIAILNDGTIMTISKDRVKPSPLPDSWKLAEIFTTGVVLGSYLAMMTVIFFWAAYKTDFFPRVFGVATLEKTAHDDFRKLASAIYLQVSTISQALIFVTRSRGWSYVERPGLLLVVAFIIAQLIATLIAVYASWSFAAIEGIGWGWAGVIWLYNIIFYFPLDIIKFLIRYALSGRAWDLVIEQRIAFTRQKDFGKEQRELQWAHAQRTLHGLQPPDSKFTERTHVSELNQMAEEAKRRAEIARLRELHTLKGHVESVVRLKGLDIDTIQQAYTV 697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3637g00002 697 PRINTS H+-transporting ATPase (proton pump) signature 508 529 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vium3637g00002 697 PRINTS H+-transporting ATPase (proton pump) signature 332 348 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vium3637g00002 697 PRINTS H+-transporting ATPase (proton pump) signature 304 320 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vium3637g00002 697 PRINTS H+-transporting ATPase (proton pump) signature 189 207 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vium3637g00002 697 PRINTS H+-transporting ATPase (proton pump) signature 363 388 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vium3637g00002 697 FunFam Plasma membrane ATPase 224 380 - -
Vium3637g00002 697 Coils Coil 648 668 - -
Vium3637g00002 697 FunFam ATPase 4 plasma membrane-type 317 563 - -
Vium3637g00002 697 SFLD p-type atpase 55 384 IPR044492 -
Vium3637g00002 697 SUPERFAMILY Calcium ATPase, transmembrane domain M 4 595 IPR023298 -
Vium3637g00002 697 Gene3D - 334 594 - -
Vium3637g00002 697 Gene3D - 1 88 - -
Vium3637g00002 697 PRINTS P-type cation-transporting ATPase superfamily signature 73 87 - -
Vium3637g00002 697 PRINTS P-type cation-transporting ATPase superfamily signature 332 351 - -
Vium3637g00002 697 PRINTS P-type cation-transporting ATPase superfamily signature 227 238 - -
Vium3637g00002 697 PRINTS P-type cation-transporting ATPase superfamily signature 355 367 - -
Vium3637g00002 697 PRINTS P-type cation-transporting ATPase superfamily signature 249 259 - -
Vium3637g00002 697 Pfam haloacid dehalogenase-like hydrolase 69 346 - -
Vium3637g00002 697 NCBIfam HAD-IC family P-type ATPase 307 420 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vium3637g00002 697 SUPERFAMILY HAD-like 69 379 IPR036412 -
Vium3637g00002 697 FunFam Plasma membrane ATPase 85 232 - -
Vium3637g00002 697 NCBIfam plasma-membrane proton-efflux P-type ATPase 1 554 IPR006534 GO:0008553|GO:0016020|GO:0120029
Vium3637g00002 697 PANTHER CALCIUM-TRANSPORTING ATPASE 1 631 - -
Vium3637g00002 697 ProSitePatterns E1-E2 ATPases phosphorylation site. 75 81 IPR018303 -
Vium3637g00002 697 SFLD Haloacid Dehalogenase 55 384 - -
Vium3637g00002 697 Gene3D - 647 697 - -
Vium3637g00002 697 Gene3D - 229 294 IPR023214 -
Vium3637g00002 697 Gene3D - 89 228 IPR023299 GO:0000166
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3637g00002 Vium-Chr3637 17278 21678 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3637g00002 1 697 Primary Pumps ATPases AT5G62670 93.266 0.0 1345
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3637g00002 K01535 - gmx:100819324 1311.98