Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3631g00002 ATGGGCAAGGCGTCAAAGTGGTTTCGCGGGCTTCTCGGTCTCAAAAAAACAGACCATCATGGCTCCCCACCCGCCAAGCCACCCAAAGAGAAACGCCGATGGAGCTTCGTTAAATCAAACACAGAAAAGGACAACAACGCTGCTGCCACGTGTCCACCACAACGAAACGACGGCGGCAACCACGCCATGGCAGTCGCAGCAGCCACTGCTGCGGTGGCGGAAGCGGCCGTGGCTGCCGCCGAAGCTGCCGCCGTTGTTGTCAGACTAACGAGCAACAGTGGCAGATGTGCCGACGTGGGACCCACAAGGATTCGCCAACACTGGGCCGCCGTTAAGATCCAAGCCGCTTTTCGAGGCTGTTTGGCAAGGAGAGCACTGAGAGCATTAAAAGGGTTGGTGAAACTTCAAGCATTGGTGAGAGGTCACATTGAGAGGAAGCGTACAGCGCAGTGGCTGAAAAGAGTGCAAGCACTCTTGCATACACAGACACAAGTCTCTGCAGGGTTGGCTCTCCATGCCTCACCTTCAAGTGCAAAGTTATCTAGCCACTTCCATGGTCCGGAAACACCAGAAAAATTTGAAAGCCCCATCAGCTCTAAGAGCATGAAATACGAGCAATCACCTGTATTCAAGCGAAATGGCTCCAAATCCTGTGTCCAGATCAATGGCTATCAAGAGATATGTGGTAATAGATTGGAGAATCAAGTAACTGAACAACCATGGAGCTCGGCAAGATCATTGATAAGAACATATAGTTCCAATGATGAAAGAAATGACAGGGTTCTTGAAGTTGATTCTGGAAAACCACACTTTACAAAGCGTAGAAACCTCTCTTACTCCACAGTTTCTGATCATTATAGCAAGAGTTTGAACAGCACAAAGGAGTCAACATCTCTTCAATCTGGTCAAAGTCCATGTGGTGAAGTTCAGTCCTACAGTTACAGCTCACAAAAAGTCAACGAGATTGAGGATAGTCCATTCTGCACTGCTGACAACAGTCCACAATTCTTATCAGCCACTTCCAAAGATGATGGCTTCAAAAGAAGCCCTTTTACTCCCACAAGGAGTGATGGCTCTAGAAGCTACATTCGTGGTTATGCTGACTACCCAAGTTACATGGCATGCACTGCGTCTTCAAAAGCAAAGGTCAGATCTTTGAGTGCCCCAAAACAAAGGCCAAATTGTGAGAGGCCTGGTTCATCAAATAGATACTCTCTTAATGGATTTGACATGTCAAGATTGGCCACACAAAGGGCAATGCATGCAAGCTTCACCAACAAGGCATATCCAGGTTCTGGTCGTTTGGACAAACTTGGTATGCCTGTGGGGTACAGATACTAA 1341 0.4795 MGKASKWFRGLLGLKKTDHHGSPPAKPPKEKRRWSFVKSNTEKDNNAAATCPPQRNDGGNHAMAVAAATAAVAEAAVAAAEAAAVVVRLTSNSGRCADVGPTRIRQHWAAVKIQAAFRGCLARRALRALKGLVKLQALVRGHIERKRTAQWLKRVQALLHTQTQVSAGLALHASPSSAKLSSHFHGPETPEKFESPISSKSMKYEQSPVFKRNGSKSCVQINGYQEICGNRLENQVTEQPWSSARSLIRTYSSNDERNDRVLEVDSGKPHFTKRRNLSYSTVSDHYSKSLNSTKESTSLQSGQSPCGEVQSYSYSSQKVNEIEDSPFCTADNSPQFLSATSKDDGFKRSPFTPTRSDGSRSYIRGYADYPSYMACTASSKAKVRSLSAPKQRPNCERPGSSNRYSLNGFDMSRLATQRAMHASFTNKAYPGSGRLDKLGMPVGYRY 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3631g00002 446 MobiDBLite consensus disorder prediction 178 198 - -
Vium3631g00002 446 Pfam Protein of unknown function (DUF4005) 333 407 IPR025064 -
Vium3631g00002 446 ProSiteProfiles IQ motif profile. 130 157 IPR000048 GO:0005515
Vium3631g00002 446 PANTHER IQ-DOMAIN 5-RELATED 1 407 - -
Vium3631g00002 446 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 104 154 IPR027417 -
Vium3631g00002 446 MobiDBLite consensus disorder prediction 12 33 - -
Vium3631g00002 446 Pfam IQ calmodulin-binding motif 107 127 IPR000048 GO:0005515
Vium3631g00002 446 Pfam IQ calmodulin-binding motif 133 147 IPR000048 GO:0005515
Vium3631g00002 446 Gene3D - 104 158 - -
Vium3631g00002 446 SMART iq_5 105 127 IPR000048 GO:0005515
Vium3631g00002 446 SMART iq_5 128 149 IPR000048 GO:0005515
Vium3631g00002 446 ProSiteProfiles IQ motif profile. 106 134 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3631g00002 Vium-Chr3631 3598 6984 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3631g00002 1 446 IQD Protein Family AT4G23060 42.176 1.12e-72 235
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3631g00002 - - gmx:100793587 711.449