Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium362g00032 ATGTTATTTGGTTTAAACATCTGCAATCCAATTGGTCTGATAGTAGTACTGATAAAAATGTCGGAAGGAACCAATTTGGTGCTGGAATCATCTGAAAATGGTACGGATTTGTCTCAGGAAGACATTGACACCATTGAGGAAACAGCAGAGGAAACAATTTTGTCAAGACAAACTTCTGTCAACCTTGTTCCTTTTATTGGTCAAAGATTTGTATCTCAAGAAGCAGCTTATGAATTTTATTGCAGTTTTGCTAAGCAGTGCGGCTTTTCAATTAGACGACACCGAACTCGAGGGAAAGATGGGGTTGGAAGGGGAGTTACAAGGAGGGATTTCACTTGCCATCGTGGTGGTTATCCCCAGATTAAACCTTCTCATGACGGAAAGGTGCAAAGGAACCGCAAATCATCTCGCTGTGGTTGCCAAGCATACATGCGTATTGTGAAAAGGGCAGATTTTGATGTCCCTGAATGGCGTGTTACTGGTTTTAGGAACACACATAATCATGAGCTATTAAAATCCAATGAGGTGCGCCTTCTTCCAGCCTATTGTCCGATATCTCCTGATGACAAGAGTCGAATATGCATGTTTGCTAAAGCTGGAATGTCAGTAAGGCAGATGTTAAGACTGATGGAGCTGGAGAAAGGGGTCAAACTTGGTTGTCTTCCTTTTACAGAGATAGATGTAAGAAACTTGCTGCAGTCTTTCAGAATTGTGGACAGAGATAATGATGCCATTGATTTGATTGCTATGTGCAAGAGGTTAAAGGATGAAAACCATAACTTCAAATATGAATTCAAAATAGATAGTAATAACAGGCTTGAACATATTGCATGGTCCTACAGTTCATCCATTCAATCATATGAGGCATTTGGCGATGCTGTAGTTTTCGATACCACCTACCGAGTAGATGCTTATGACATGCTGTTGGGATGTTGGCTTGGTGTGGACAATAATGGCATGCCTTGTTTCTTTAGTTGCACACTTCTACGGGATGAAAACATACAATCTTTCTCATGGGCTCTCAAGGCTTTCTTGGGGTTCATGAAAGGAAAGGCTCCTCAAACAATATTGACGGATCACAACACTTGGCTGAAAGAAGCTATTGCAGTTGAATTGCCTGAAACCAAACATGCTTTTTGTATATGGCATATACTTTCCAAGTTCTCTGATTGGTTTTCTTTACTTCTTGGATCACAATACGATGAGTGGAAAGCTGAGTTCCACCGGCTCTACAATTTGGAACTGGTGGAAGATTTTGAAGAAGGCTGGCGGCAAATGGTTGACAAGTATGGACTCCACACAAATAAACATATCATTAGCCTATATTCATTGAGGACATTTTGGGCTTTACCATTCTTGAGGCGCTACTTCTTTGCAGGATTGACCATTACATCTCAGTCTGAGTCCATAAATGCTTTCATCCAACGTTTCTTGAGTGCCCAATGTCAACTAGAACGCTTTGTGGAGCAAGTGGCTGATATTGTTGATTTTAATGACCGAGCCGGAGCGAAGCAAAAGATGCAAAGGAAACTTCAAAAAGCGTGCCTCAAAACTGGTTCACCTATTGAATCCCATGCTGCCACTGTACTTACTCCCTATGCCTTGAGTAAACTTCAGGAAGAGCTAGTTATGGCGCCACAATATGCATCCTTCCTGGTTGATGAAGGTTGTTTCCAGGTCAGACACCACTCTCAGACAGATGGAGGATGCAAAGTATTTTGGGTTCCTTGTCAAGAGCACATAAGCTGCAGCTGTCATCTGTTTGAGTTTTCAGGCATCTTATGTAGACATGTGCTACGTGTCATGTCAACTAATAACTGTTTCCACGTCCCTGATCAATATTTACCAGGTCGATGGCGAGGCACTGGTTCATCTTCTGTTAACCAATTCCGGGGTACCACTAGTAGGGATCAGCCTGAAAGGATGCAACTTTTGGAATCCATGGTTTCAACATTTATAGTGGAATCCATTGAAACTGATGAACGTCTGGATGTTGCTTGCGAGCAAATTTCCATGGTGCTATCACGCATCAAAACTCTTCCTAGGTCTCCACATGGGGTGAATGACATTGCATTTGGTTATCCATCAGATTCATTAATCCTCCCAGAGGTAGAAGATACTAATGGAATGATTCACAACTTTACAATCACAAATCCCCATGATTCTATCACTACAGGAAAGCTCAAGGAAAGAAGGGCCAGAGATGGAGTCGATCTCACAAGGAAGCGAAGACAGTTTTCTGCACCATTGTGTGCTCAATATGGACATGATCCATCTGATTGCTCAATAATGGCCACTGACAATATGAGTGGAGATGCATTAGGGTACTTGTAA 2334 0.4195 MLFGLNICNPIGLIVVLIKMSEGTNLVLESSENGTDLSQEDIDTIEETAEETILSRQTSVNLVPFIGQRFVSQEAAYEFYCSFAKQCGFSIRRHRTRGKDGVGRGVTRRDFTCHRGGYPQIKPSHDGKVQRNRKSSRCGCQAYMRIVKRADFDVPEWRVTGFRNTHNHELLKSNEVRLLPAYCPISPDDKSRICMFAKAGMSVRQMLRLMELEKGVKLGCLPFTEIDVRNLLQSFRIVDRDNDAIDLIAMCKRLKDENHNFKYEFKIDSNNRLEHIAWSYSSSIQSYEAFGDAVVFDTTYRVDAYDMLLGCWLGVDNNGMPCFFSCTLLRDENIQSFSWALKAFLGFMKGKAPQTILTDHNTWLKEAIAVELPETKHAFCIWHILSKFSDWFSLLLGSQYDEWKAEFHRLYNLELVEDFEEGWRQMVDKYGLHTNKHIISLYSLRTFWALPFLRRYFFAGLTITSQSESINAFIQRFLSAQCQLERFVEQVADIVDFNDRAGAKQKMQRKLQKACLKTGSPIESHAATVLTPYALSKLQEELVMAPQYASFLVDEGCFQVRHHSQTDGGCKVFWVPCQEHISCSCHLFEFSGILCRHVLRVMSTNNCFHVPDQYLPGRWRGTGSSSVNQFRGTTSRDQPERMQLLESMVSTFIVESIETDERLDVACEQISMVLSRIKTLPRSPHGVNDIAFGYPSDSLILPEVEDTNGMIHNFTITNPHDSITTGKLKERRARDGVDLTRKRRQFSAPLCAQYGHDPSDCSIMATDNMSGDALGYL 777
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium362g00032 777 Pfam FAR1 DNA-binding domain 78 171 IPR004330 -
Vium362g00032 777 Pfam SWIM zinc finger 578 603 IPR007527 GO:0008270
Vium362g00032 777 SMART 26again6 581 608 IPR006564 GO:0008270
Vium362g00032 777 Pfam MULE transposase domain 294 386 IPR018289 -
Vium362g00032 777 ProSiteProfiles Zinc finger SWIM-type profile. 573 606 IPR007527 GO:0008270
Vium362g00032 777 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 58 624 IPR031052 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium362g00032 Vium-Chr362 239542 251739 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Vium362g00032 MULE 2.9e-20 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium362g00032 - - vum:124836934 1584.7