Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium362g00029 ATGAATCTCGGCAGCGGCAAGGGATCAACTTCCAGTTCTCCTCTGAAAACCGGGGATGTTGTCTCCGACCAGTTTCCGGCGGGTCTCAGGGTGATGGTGGTGGATGATGATCCCACTTGTCTTAGGATACTTGAGAGGATGCTGCGTGCTTGTCTCTATGAAGTGACGAAATGCAAGCGGGCTGAGGTTGCATTGTCGCTTCTGAGAGAGAACAAAAACGGGTTTGACATTGTTTTGAGCGATGTGCATATGCCAGACATGGATGGATTCAAGCTTCTGGAGCATATTGGGTTGGAGATGGACCTTCCGGTTATTATGATGTCTGCTGATGATGGAAAAAGCGTTGTGATGAAAGGGGTGACACACGGTGCCTGTGATTATCTGATTAAACCTGTGAGAATTGAGGCTTTGAAGAACATATGGCAGCATGTGATTCGGAAGAGAAAGAATGGGTTGAAAGATGCAGAGCAATCGGGTAGTGTGGAGGAAGGAGATCGGCTTCTAAAAGGGTGTGACGATGGAGATTATTCATCTTCAGTGAATGAAGGCAAAGGCTCAAAGAAGAGGAGGGATGAGGAGGAAGAAGGAGATGAGAGGGATGATTCCTCCACGTTGAAGAAGCCACGAGTTGTTTGGTCTGTTGAGCTTCATCAGCAGTTTATGGCTGCTGTGAATCAACTTGGAATTGATAAGGCAGTTCCTAAGAAGATTCTGGAGTTGATGAATGTTCCTGGGCTCACTAGAGAAAATGTTGCCAGCCACCTCCAGAAATACCGTTTGTATCTTCGAAGACTGAGTGGAGTTTCACAGCAGCAGGGCAACTTGACCAACTCCTTCATCAGCTCACAAGAAGCAACATTTGGGGCAACCTCAATCAATGGAATTGATCTTCAAACTCTTTCAGTTGCCGGTCAGCTTCCAGCTCAAAGTCTAGCTAAGCTTCAAGCCGTAGCACTTGGCAGGACAACTTCTAAAGCTGGTGTGTCTATGCCTCTATCTGATCAAAAGAACCTTTTCAGTTTTGAGAGCCCAAGATTAAGATTTGCAGAAGGGTCACTGCATCATTTAAGCAACAGTAAACCAATGAACCTGCTTCATGGCATTCCTACCAACATGGAGCCGAAACAGCTTGTCACTCTGCACCAATCTACCCAAACCCTTGGTAACTTGAACATGCGAGTCAGTACTCCTGCTGCACAGAACAACCCCTTGTTGATGCAGATGGCTCAGTCTCAACCAAGAGGTCAGATTCTAAGTGAAAATGCCGATTCTCATGCAACCAGGTTTCCATCATCTTTGGTTCAGCCTATAGTACCAAATAGTATTTCTAATGGTGTTTTGGGAAATAGAATTACTGGCTCCAGCAACATAACTAGTGCTTATAATACAGTTCCACAAAACTCTTCATTGTTGAGTTTTCCCATCAACCAAACCAATGAAATGCCTGTCGGTAATTTTCCTCTTAGAAGCACTCCAGGTATAACTAGTATCCCGACTAAAGCCATGTTTCATGAAGAAGGTACCTCCGGCATTACAGGACCTGATGGATTTGTTTCAAGTTATGATATGTTTAATGAACTCCACCATCAGAAGTCCCATGATTGGGACTTAACAAGCACGGGCATAACATATGATTCTTCTCAGCATGCAAATCCTTTACAAGGTAACATTGATGTCTCACCATCAGTTTTAGTCCATCAGGGTTTTCCCTGCTTGCAACAGTCTGTGCAAACTAGAGATTCCACTTCAATTGGAAAACCTCTGTTCTCCACTGGGGAAGCCATACATCAGAGTAATCTCCAAAATGTTAGTCAACAACACCTCAATAACCTTGTTGACAGTTCAGTAAGGGTTAAGGCTGAAACATTTCCTGATCCAAGCTCCCAGATTAATAACCTCTTCTCTGATCAGTACGGTCAGGAGGATCTTGTCACTGCATTTCTGAAACAGCAAGAAGGTGTAGGACCATCTGATCACGATTTAGACTTTGATGGATATTCCTTAGACAACATTCCGGTTTAG 2022 0.4431 MNLGSGKGSTSSSPLKTGDVVSDQFPAGLRVMVVDDDPTCLRILERMLRACLYEVTKCKRAEVALSLLRENKNGFDIVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADDGKSVVMKGVTHGACDYLIKPVRIEALKNIWQHVIRKRKNGLKDAEQSGSVEEGDRLLKGCDDGDYSSSVNEGKGSKKRRDEEEEGDERDDSSTLKKPRVVWSVELHQQFMAAVNQLGIDKAVPKKILELMNVPGLTRENVASHLQKYRLYLRRLSGVSQQQGNLTNSFISSQEATFGATSINGIDLQTLSVAGQLPAQSLAKLQAVALGRTTSKAGVSMPLSDQKNLFSFESPRLRFAEGSLHHLSNSKPMNLLHGIPTNMEPKQLVTLHQSTQTLGNLNMRVSTPAAQNNPLLMQMAQSQPRGQILSENADSHATRFPSSLVQPIVPNSISNGVLGNRITGSSNITSAYNTVPQNSSLLSFPINQTNEMPVGNFPLRSTPGITSIPTKAMFHEEGTSGITGPDGFVSSYDMFNELHHQKSHDWDLTSTGITYDSSQHANPLQGNIDVSPSVLVHQGFPCLQQSVQTRDSTSIGKPLFSTGEAIHQSNLQNVSQQHLNNLVDSSVRVKAETFPDPSSQINNLFSDQYGQEDLVTAFLKQQEGVGPSDHDLDFDGYSLDNIPV 673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium362g00029 673 MobiDBLite consensus disorder prediction 152 172 - -
Vium362g00029 673 MobiDBLite consensus disorder prediction 152 204 - -
Vium362g00029 673 MobiDBLite consensus disorder prediction 182 204 - -
Vium362g00029 673 ProSiteProfiles Response regulatory domain profile. 30 145 IPR001789 GO:0000160
Vium362g00029 673 CDD REC_typeB_ARR-like 31 145 - -
Vium362g00029 673 SMART REC_2 29 141 IPR001789 GO:0000160
Vium362g00029 673 Pfam Response regulator receiver domain 31 139 IPR001789 GO:0000160
Vium362g00029 673 SUPERFAMILY Homeodomain-like 204 264 IPR009057 -
Vium362g00029 673 PIRSF RR_ARR_type-B 6 664 IPR017053 GO:0003677|GO:0003700|GO:0009736
Vium362g00029 673 SUPERFAMILY CheY-like 28 149 IPR011006 -
Vium362g00029 673 PANTHER TWO-COMPONENT RESPONSE REGULATOR 29 374 IPR045279 GO:0009736
Vium362g00029 673 Pfam Myb-like DNA-binding domain 209 259 IPR001005 -
Vium362g00029 673 FunFam Two-component response regulator 29 166 - -
Vium362g00029 673 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 206 263 IPR017930 -
Vium362g00029 673 FunFam Two-component response regulator 203 266 - -
Vium362g00029 673 NCBIfam myb-like DNA-binding domain, SHAQKYF class 207 260 IPR006447 GO:0003677
Vium362g00029 673 Gene3D - 29 161 - -
Vium362g00029 673 Gene3D - 204 266 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium362g00029 Vium-Chr362 229749 233682 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium362g00029 63 673 Response Regulator Gene Family AT3G16857 49.160 3.01e-171 501
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Vium362g00029 Response_reg 2.8e-22 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium362g00029 - K14491 gmx:100809583 1124