Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium362g00028 ATGACAACCTTAAACATTAATATTCCTATATTCATATACCATGATATTCTAACATCTAACACCAAAACCACGCATATACACAATTTTTTCGCTTCAGGCACTTTGTTCGGAGTTCTTAGCCATGTCCATGCATGTCCACGTCTTCGTCTTCTTAACGCTTGCATCTTTTCGGCAACGCCGTCGATGTCTCAGTCGCAAACCGCAGCTTCCTGCAATGGAATATTCGTCTCCTACGTCTACACCGGCGGCGAGCGGCTGCCGCCGAACGTTTCCGACGCGACGCAGCAGCCTTACCGGTTCGAGTCGAGGCTGACAGTGCTGAACAACGGGTTGGAGGAGCTGAAGTCTTGGAAGGTGTTCGTGGGGTTTCAGCACGGCGAGTGGTTGGTTTCCGCGTCGAACGCCGTGCTCGCGGACGGTACAAGTATTCCCGGTGCGGTTGGGAACGGCACCGTGTTGAGCGGGTCGTCGGTGAAGGATCTGAAGACGGCGGTGGCGACCGCCGGCGACTTGACCCAGATGCAGGTTCAGGTGGAGATGGTGGGGAGCCTTCTTGGGGTGGCACCACCTTCCGTGCCGATGCCTCGGTCGGTTACTTTGGCTAACGATGGATTCGTCTGTGGTCAACCCTCCGGAGAAGGGAGCAATGAAACGCATGTGTGTTGCAGAAGTGATCCCAGTTCCAGAACAAACGTGAGCACAGAGGTAGAGTTTCTTCCCCGTGAGAAGGGTGATCTTAGCATCACATACGACATCATCAGAACCTACGATTCCAATTACTGGGCAGAGGTTACAATCGCAAACGACAACCCTTTGGGCCGTCTCGATAACTGGAGACTAAGCTGGGACTGGCAAAACGACGAGTTCATCTACACGACAAAGGGTGCATATCCATTAAAAGTGGATTCCTCCGACTGTGTTTTCGGTTCTCAAGGTAGTTTCTACAAGGAACTAGACTTTGCTAACGTCTTGAACTGTGAAAGAAGGCCAACCATAGTGGATCTTCCTCCCTCAAGGTTCAACGATTCAGAACTCGGTCAAATCCCATTCTGCTGCAGGAATGGCACCATCTTGCCACCAACAATGGACCCTAGCATGTCAACTTCAAGGTTCCAAATTCAAGTCTTCAAAATGCCACCCAACCTTAACCGCTCCACCCTCACACCTCCTCGTAACTGGGAGATAAAGGGTACCTTTAACCCTAACTATGAATGTGGCAACCCTATCAGGGTTAGTCCAACTGAATCCCCTGACCTCACTCACCCTCCATCAAACAAATCATCAATTGCAACTTGGCAAGTGGTCTGCAACATCACAAGCACAGAACGTGAAACTCCCAAGTGCTGCGTTTCTTTCTCAGCTTATTACAATGAATCGGTTATCCCATGCAACACGTGTGCATGTGGATGTCCAAGTAATCCGGAGAGAACATGCAGCGCAGCTTCACAAGCTATGTTGCTTCCACCGGAGGCACTTCTTGTCCCTTTTGAGAACCGAACTAAGAAGGCCGTTTCTTGGGCTGAGATTAAACATTTACCTGTGCCTAATCCCATGCCTTGTGGTGACAACTGTGGTGTGAGCATAAACTGGCACGTGGCCACGGATTACCGCAAAGGTTGGACCGCGAGGGTGACACTTTTCAACTGGGGTGACACCAGTTTTGCTGACTGGTTTGCTGCAGTGGAAATGGACAAAGCTGCGAAGGGGTTTGAGGAAGTGTACTCGTTCAACGGAAGCCTTTTGGAGAGTGTGGAGAACACGATCTTCATGCAAGGGAAAGAGGGGTTGAATTTTCTTGTGGCGGAAACTGATGGATCTAACCCTCGGAAAGATCCTAGGGTGCCGGGGAAACAGCAATCGGTGATCTCGTTTACGAAGAAGGAGACCCCTGGAATCAATGTGGTTGGTGGTGATGCGTTTCCAAGTAAAGTGTTCTTCAATGGGGAAGAATGTTCTCTTCCTTCGGTGTTACCAAGCAGTGTTGCGAGAACGGAGGTTCCTTTGGCTACTATGATGTTCTTACTGATGTTGTTGTCGGTCTTCTTCATGTCGCAATAG 2058 0.5005 MTTLNINIPIFIYHDILTSNTKTTHIHNFFASGTLFGVLSHVHACPRLRLLNACIFSATPSMSQSQTAASCNGIFVSYVYTGGERLPPNVSDATQQPYRFESRLTVLNNGLEELKSWKVFVGFQHGEWLVSASNAVLADGTSIPGAVGNGTVLSGSSVKDLKTAVATAGDLTQMQVQVEMVGSLLGVAPPSVPMPRSVTLANDGFVCGQPSGEGSNETHVCCRSDPSSRTNVSTEVEFLPREKGDLSITYDIIRTYDSNYWAEVTIANDNPLGRLDNWRLSWDWQNDEFIYTTKGAYPLKVDSSDCVFGSQGSFYKELDFANVLNCERRPTIVDLPPSRFNDSELGQIPFCCRNGTILPPTMDPSMSTSRFQIQVFKMPPNLNRSTLTPPRNWEIKGTFNPNYECGNPIRVSPTESPDLTHPPSNKSSIATWQVVCNITSTERETPKCCVSFSAYYNESVIPCNTCACGCPSNPERTCSAASQAMLLPPEALLVPFENRTKKAVSWAEIKHLPVPNPMPCGDNCGVSINWHVATDYRKGWTARVTLFNWGDTSFADWFAAVEMDKAAKGFEEVYSFNGSLLESVENTIFMQGKEGLNFLVAETDGSNPRKDPRVPGKQQSVISFTKKETPGINVVGGDAFPSKVFFNGEECSLPSVLPSSVARTEVPLATMMFLLMLLSVFFMSQ 685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium362g00028 685 PANTHER COBRA-LIKE PROTEIN 7 62 683 - -
Vium362g00028 685 Pfam COBRA-like protein 260 439 IPR006918 GO:0010215|GO:0016020
Vium362g00028 685 SUPERFAMILY Carbohydrate-binding domain 242 291 IPR008965 GO:0030246
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium362g00028 Vium-Chr362 226836 229416 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium362g00028 71 666 COBRA Gene Family AT4G16120 63.394 0.0 816
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium362g00028 - - vum:124836920 1390.17