Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium362g00024 ATGAGTGGTGCATCAGAAAACCCTATTCATGACAGTACAGAAGGTAAGGCTTCTTCTTCTTCATCAACAACGTTGAAACTATTTGGTTTTCCATTAACCCCACCAGGTTACAGAGAGATTCACGTGGTGGCGGCAAGCACCGCCGTTTCTCCTCCTCATTGCCCTTACAAGAGATTCAAGTGCCACTTCTGCTACCGTGAATTCGCCAATTCACAAGCTCTCGGTGGCCACCAAAACGCTCACAAGAGAGAACGCCAGAAAGCTGCTCTCTCACCCTTCGGTTACTTTCGCTACCATCAACGGCTCGTACCACCGGGTCATTCTCCGATCGTGGTCCCGCACGGAGGATCAAGGCCGTTGGTTGGTCCACGTGACCGGGCTCAGCGACCGTGGCTCTCGTGGGACACTGATGAGAGAGCTTATCATAGGGTTGGGTTAGTGAGGCCAATGGGTGCAAGTGCAATTAGCATTGGCACAGTGAGAGAAGTACACAATATTATTGATGATGGTGATGGGACAATGAATTTGGCAGGTGTAAGAGAAGTTGAATATGGACCAAAACCTTCCCAGTACTACTTTTGTGCTTATCACTTTCACTGCCCTTACAAGATAGGGATGTTTTGGCTTGGCTCCTAA 636 0.4906 MSGASENPIHDSTEGKASSSSSTTLKLFGFPLTPPGYREIHVVAASTAVSPPHCPYKRFKCHFCYREFANSQALGGHQNAHKRERQKAALSPFGYFRYHQRLVPPGHSPIVVPHGGSRPLVGPRDRAQRPWLSWDTDERAYHRVGLVRPMGASAISIGTVREVHNIIDDGDGTMNLAGVREVEYGPKPSQYYFCAYHFHCPYKIGMFWLGS 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium362g00024 211 ProSitePatterns Zinc finger C2H2 type domain signature. 61 81 IPR013087 -
Vium362g00024 211 PANTHER ZINC FINGER PROTEIN 5 14 88 IPR044299 GO:0010090
Vium362g00024 211 Gene3D Classic Zinc Finger 43 92 - -
Vium362g00024 211 SUPERFAMILY beta-beta-alpha zinc fingers 57 86 IPR036236 -
Vium362g00024 211 ProSiteProfiles Zinc finger C2H2 type domain profile. 59 86 IPR013087 -
Vium362g00024 211 MobiDBLite consensus disorder prediction 1 22 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium362g00024 Vium-Chr362 189702 190443 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium362g00024 57 88 C2H2 Transcription Factor Family AT5G06650 78.125 6.72e-12 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium362g00024 - - vun:114162545 295.049