Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium362g00016 ATGGCTCACGACTTAACGGGGCAGCTTGTGGGTTCAGAGATACATGGGTTTCACACCTTGCAGGATCTGGATGTTAGTAATACTATGGAGGAAGCAAAAAGCAGATGGCTTCGTCCAAATGAGATACATGCCATACTCTGTAATCACAAATATTTCAAGATCAAGGCCAAGCCAGTGCATTTGCCCGAAAGTGGTACTATTGTACTATTTGACCGCAAGATGCTTAGAAATTTCAGAAAAGATGGGCACAATTGGAAAAAGAAAAGCGATGGGAAAACTGTTAAAGAAGCTCACGAACACTTAAAAGTGAGGATTTCATTTCCTGGTTGTTTATTTAAAGTTTGGTGTTAG 351 0.4046 MAHDLTGQLVGSEIHGFHTLQDLDVSNTMEEAKSRWLRPNEIHAILCNHKYFKIKAKPVHLPESGTIVLFDRKMLRNFRKDGHNWKKKSDGKTVKEAHEHLKVRISFPGCLFKVWC 116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium362g00016 116 SMART CG_1_2 29 113 IPR005559 GO:0003677
Vium362g00016 116 Pfam CG-1 domain 31 104 IPR005559 GO:0003677
Vium362g00016 116 ProSiteProfiles CG-1 DNA-binding domain profile. 25 116 IPR005559 GO:0003677
Vium362g00016 116 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 24 103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium362g00016 Vium-Chr362 107584 111250 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium362g00016 1 103 CAMTA Transcription Factor Family AT4G16150 78.641 6.53e-47 159
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium362g00016 K21596 - vum:124836832 249.595