Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium362g00015 ATGAACATCATGTCAGATGCACCATGTTCCATAGACGAGTCAGCTCTCGCAACATCAATTTCTACTGTTCGTGAACCATATTTATCACTGGTGGCAGATAATCAGCTATCTTCTTTGCCTGAACAAGTATTTAATCTCACAGAAGTGTCCCCTGCTTGGGCATCTTCCACTGAGAAAACAAAGGTCCTGATAACTGGATATTTTCATAGTGACTATCAACACCTTGCAAAGTTCAACCTAGTGTGTGTCTGTGGTGATGTAAGTTTTCCTGTAGAAATTGTTCAGGTCGGGGTTTACCGATGCTGGGTGCTACCACACTCCCCTGGATTGGTCAATATCTATTTGAGCTTTGATGGCTACAAGCCTATTAGCCATGTTGTTAATTTTGAGTATCGTACTCCCATTTTGCATGATCCAACTGCTTCAATGGAAGAGAAATACAACTGGAATGAATTTCGACTTCAGATGAGGCTTGCTCATTTGCTCTTTTCTACCGACAAGATCCTTGATATTTTCTCAAATACAGTATCACCAAATGCTCTGAAAGAGGCTAGCAGATTTTCCTTCAAAACATCATTTATCTCCAAAAGCTGGCAATTCTTGATGAAGTCAATTGACGAGCAAACAACTCCATTTCCACAAGTAAAAGATAGCTTGTTTGAAATTGCATTGAAAAACAAATTAAAGGAATGGCTTTTAGAACGAATTGTTGTAGGCAGCAAGAGTACGGAATATGATGCACAAGGGCAAGGTGTACTTCATTTGTGTGCAATGCTTGGATATAGTTGGGCAATCTCCTTATTTTCTTGGTCAGGCTTGTCTCTAGATTTCCGTGACAAATTTGGATGGACAGCTCTTCATTGGGCAGCTTATTATGGAATGGAGAAAATGGTTGCAACTCTGCTGTCCGCTGGGGCAAGGCCAAACCTGGTCACAGATCCTACTCCGAAAAATCCTGGTGGGTGTACTGCTGCTGATCTTGCTTATACGAAGGGCTATGATGGCTTAGCTGCTTACCTTTCCGAAAAGTCTCTGGTTGAGCAGTTCAATGACATGAGCTTGGCTGGAAATATCAGTGGCACACTGGACACTAGCTCAACTGATGTAGTAAACACTCAAGAACTTACTGAGGACCAGTTCTATTTAAAGGAGACATTGGCAGCTTACCGTACTGCTGCTGGGGCAGCGGCACGCATTCAAGCTGCATATAAGGAGCATGAGCTAAATCTACGATACAAGGCTGTTGAATTAAACACCCCAGAGCATCAAGCACGTCGTATAGTAGCAGCAATGAAGATTCAACATGCCTTTCGCAAGTATGAGACAAAGAAATCAAATGCAGCTGCTGTTCGAATTCAGCATAGATTCCGGACACGGAAAATCCGTAGAGAATTTCTTAATATGCGGCGTCAGGCTATTAAAATCCAAGCTGCTTTCAGGGGCTTTCAAGTCCGGAGGCAATATAAAAAGATCATATGGTCTGTTGGGGTGTTAGAGAAAGCAATTCTGCGATGGCGGTTAAAGAGGAAAGGCTTTCGAGGTCTCCAGGTTAATTCTGCTGAGGATGGGGAGCAGGAAGACGGTGTAGAGGAGGAATTCTTCAGGACTGGCCTGAAACAAGCCGAAGAACGTGTCGAGAGGTCGGTCGTACGTGTGCAGGCCATGTTCCGTTCTAAGAAAGCTCAAGAAGAATACAGAAGAATGAAGCTAGCATATAGTCAAGCAAAGATGGATCTGGAATTTGAAGATTTCCTCACTTCTGAAGTTGACATGTTAACTGACATATAG 1788 0.4295 MNIMSDAPCSIDESALATSISTVREPYLSLVADNQLSSLPEQVFNLTEVSPAWASSTEKTKVLITGYFHSDYQHLAKFNLVCVCGDVSFPVEIVQVGVYRCWVLPHSPGLVNIYLSFDGYKPISHVVNFEYRTPILHDPTASMEEKYNWNEFRLQMRLAHLLFSTDKILDIFSNTVSPNALKEASRFSFKTSFISKSWQFLMKSIDEQTTPFPQVKDSLFEIALKNKLKEWLLERIVVGSKSTEYDAQGQGVLHLCAMLGYSWAISLFSWSGLSLDFRDKFGWTALHWAAYYGMEKMVATLLSAGARPNLVTDPTPKNPGGCTAADLAYTKGYDGLAAYLSEKSLVEQFNDMSLAGNISGTLDTSSTDVVNTQELTEDQFYLKETLAAYRTAAGAAARIQAAYKEHELNLRYKAVELNTPEHQARRIVAAMKIQHAFRKYETKKSNAAAVRIQHRFRTRKIRREFLNMRRQAIKIQAAFRGFQVRRQYKKIIWSVGVLEKAILRWRLKRKGFRGLQVNSAEDGEQEDGVEEEFFRTGLKQAEERVERSVVRVQAMFRSKKAQEEYRRMKLAYSQAKMDLEFEDFLTSEVDMLTDI 595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium362g00015 595 ProSiteProfiles Ankyrin repeat region circular profile. 281 309 - -
Vium362g00015 595 SUPERFAMILY Ankyrin repeat 222 343 IPR036770 -
Vium362g00015 595 Pfam Ankyrin repeats (3 copies) 223 310 IPR002110 GO:0005515
Vium362g00015 595 Gene3D Immunoglobulins 40 135 IPR013783 -
Vium362g00015 595 Gene3D - 209 350 IPR036770 -
Vium362g00015 595 ProSiteProfiles IQ motif profile. 468 492 IPR000048 GO:0005515
Vium362g00015 595 Gene3D - 442 492 - -
Vium362g00015 595 FunFam calmodulin-binding transcription activator 5 211 351 - -
Vium362g00015 595 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 40 575 - -
Vium362g00015 595 SMART iq_5 544 566 IPR000048 GO:0005515
Vium362g00015 595 SMART iq_5 444 466 IPR000048 GO:0005515
Vium362g00015 595 SMART iq_5 467 489 IPR000048 GO:0005515
Vium362g00015 595 ProSiteProfiles IQ motif profile. 546 574 IPR000048 GO:0005515
Vium362g00015 595 SMART ANK_2a 320 351 IPR002110 GO:0005515
Vium362g00015 595 SMART ANK_2a 281 310 IPR002110 GO:0005515
Vium362g00015 595 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 411 571 IPR027417 -
Vium362g00015 595 ProSiteProfiles IQ motif profile. 445 474 IPR000048 GO:0005515
Vium362g00015 595 Pfam IQ calmodulin-binding motif 470 489 IPR000048 GO:0005515
Vium362g00015 595 SUPERFAMILY E set domains 45 132 IPR014756 -
Vium362g00015 595 ProSiteProfiles Ankyrin repeat profile. 281 313 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium362g00015 Vium-Chr362 99906 103089 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium362g00015 2 578 CAMTA Transcription Factor Family AT3G16940 56.649 0.0 669
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium362g00015 K21596 - gmx:100819198 954.51