Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3627g00001 ATGACTCCTAAGAAGAAAAACTCCACAAGTTCAGAATCAGTTACAGTAATGGTAAAGGGTTCACATGAGTTCAAGGTGAAAGGTTATTCACTGGTGAAGGGAATCGGAGTGGGAAAATTTATTGCAAGTGAGACGTTCAATGTTGGAGGGTATGAGTGGGCTATATACTTCTACCCTGACGGTGTAGACACCCGAGAACACGCCACAGTTTATGTCTCGGTTTTCGTTGTGCTCGTTTCCAATGCTAATGATGTTCGAGCGATGTTTGAATTCGCCATGCATGACCAAAGAGGGCAAGGGGAACACTTTGTCCTTGGTCACTTTAATGACACTCTAGGGACTGAGCCTCACACTTTATCCAAGGGGGAAATGTGGGGGATCAAACGTTTTTACAAACGCTTTCACCTTGAACACTCAATGTATCTCATAGATGACTGTCTACAAGTAAATTGCACTGTTGGGGTTTTGCCTACCACCCGAGATAATTCCATGACTATAGAAGTTCCCGAATCTACCATTTCAACAAGTTTTGGGATGCTGTTTGAAGATGAGCAATCATCTGATGTTACGTTTTGTGTCGGAGGAAACAAGTTTTATGCGCATAAGATTGTATTGGCGGCTCGGTCAAGTGTGTTTAAATCTCAGTTTTTCTGTGGAACTGACAAGGTTGATAGAGAGATACTTGTCAATGAGATGGAGCCTAAGGTTTTCAAGGCATTACTGCACTTTATTTATAAAGATACTCTTATAGAAGATGAAGAACTCCATTTGTCAATGTCTTCATCCATGGCTTCTATCTCAGAATGGTATGTATCGAAGTTGCTGGCTGCTGCACACAAGTACGATTTACCAAGGCTAAAGTTGATGTGTGAATCTGTACTTTGCAAACATATATCTATAGATTCTGTTGCTCAGATTCTGGTTATTTCTGATTGTTATGATGCCACTGAATTGAAGTTCATATGTCTGCAATTTTCAGCAGAAAACCTTAATGCTGTGCTGAAATCTGATGGTTTCAAGCATCTTAAGGAAAAGTGTCCACTTCTTCCATTTGAACTGCTAGAGACTGTGGCAGCAGGAATTGGGTGTGTCAGTGTTGACAGTGATGCAACCACACCTGAGCCAAATGAAATAGAAGCTGAGAGCACAAGTTATTATCCTTCCAGCGATGAGGAAAACCATCTGGGTTGGTAG 1194 0.4137 MTPKKKNSTSSESVTVMVKGSHEFKVKGYSLVKGIGVGKFIASETFNVGGYEWAIYFYPDGVDTREHATVYVSVFVVLVSNANDVRAMFEFAMHDQRGQGEHFVLGHFNDTLGTEPHTLSKGEMWGIKRFYKRFHLEHSMYLIDDCLQVNCTVGVLPTTRDNSMTIEVPESTISTSFGMLFEDEQSSDVTFCVGGNKFYAHKIVLAARSSVFKSQFFCGTDKVDREILVNEMEPKVFKALLHFIYKDTLIEDEELHLSMSSSMASISEWYVSKLLAAAHKYDLPRLKLMCESVLCKHISIDSVAQILVISDCYDATELKFICLQFSAENLNAVLKSDGFKHLKEKCPLLPFELLETVAAGIGCVSVDSDATTPEPNEIEAESTSYYPSSDEENHLGW 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3627g00001 397 MobiDBLite consensus disorder prediction 368 397 - -
Vium3627g00001 397 ProSiteProfiles MATH/TRAF domain profile. 19 153 IPR002083 GO:0005515
Vium3627g00001 397 ProSiteProfiles BTB domain profile. 187 253 IPR000210 GO:0005515
Vium3627g00001 397 SMART BTB_4 187 298 IPR000210 GO:0005515
Vium3627g00001 397 Pfam BTB/POZ domain 179 297 IPR000210 GO:0005515
Vium3627g00001 397 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 17 156 IPR008974 GO:0005515
Vium3627g00001 397 SUPERFAMILY POZ domain 163 298 IPR011333 -
Vium3627g00001 397 CDD BTB_POZ_BPM_plant 177 295 - -
Vium3627g00001 397 PANTHER BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 1 9 352 IPR045005 GO:0016567
Vium3627g00001 397 MobiDBLite consensus disorder prediction 369 390 - -
Vium3627g00001 397 Gene3D - 299 365 - -
Vium3627g00001 397 Gene3D Potassium Channel Kv1.1; Chain A 163 298 IPR011333 -
Vium3627g00001 397 CDD MATH 20 153 IPR002083 GO:0005515
Vium3627g00001 397 SUPERFAMILY TRAF domain-like 18 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3627g00001 Vium-Chr3627 3017 4490 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Vium3627g00001 BTB 1.9e-25 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3627g00001 K10523 - gmx:100809683 421.779