Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3625g00005 AAACCAAATCTGCGAAACGAAAGCAGGCAAAACATACTCACGCAAGAAACTACAACACACATAACTCAACAACAACTTTCTCATCACATTATTTTTCCCTCTACCATCTCATCTTCACTCCCATTCACATTCTCCACCACCCAAACCAACAACGTAGCAACCACAACCGAAATGGAACAAAAACAATCTACACAACACCACAACCATGACTTCATCTTCCGTTCCAAACTCCCCGACATTTACATTCCCACGCACCTCCCTCTCCACACTTACATCTTCCAAAACATCTCCCAATTCAACCACCGACCCTGCCTCATCAACGCCGCCACCGGAGAATGCTTCACCTATGCCCACGTCCAACTCACCGCCCGCAGAGTCGCCGCCGGCCTCAACAAACTCGGCATCCAACACGGCGACGTCATCCTCCTTCTGCTCCAGAACTGCCCCCAGTTCGTCTTCGCATTCCTGGGCTCCTCCTTCTGCGGCGCCACCGTCACCACCGCTAACCCCTTCTACACTCCGGCGGAGGTGGCCAAGCAAGCCGCGGCCTCCAACGCCAAACTCATCATAACACAGGCGTCCTACGTGGACAAAGTGAAGGATTTCGCGAGGGAAAACGACGTCAGAGTGATGTGTGTTGACGGGGCGCCGCCGCTGGAAGGTTTCCTTCAGTTCTCGGAGTTAACGAAGGCAAACGAGAATGACATTCCCGGCGTTAAAATATCCCCAGATGACGTGGTTGCGCTGCCGTATTCTTCTGGAACGACGGGGCTTCCGAAGGGAGTGATGCTAACGCACAAAGGGCTGATTACGAGCGTGGCGCAACAGGTGGACGGAGAGAACCCTAATCTGTATATACGCAGCAAAGACGTGGTGTTGTGCGTGCTTCCACTTTTCCATATCTATTCCCTCAACACTGTTTTGCTTTGTTCCCTTCGAGTTGGGGCTGCAGTTTTGATAATGCCCAAATTCGATATAGTTAAGTTGATGGAGCTGGTGGAAAAACACAAGGTGAGCGTGGCGCCGTTTGTGCCACCCATCATTTTGGCCATTGCCAAGAGTCAAGATTTGCAGCGATACGACCTGTCGTCGATTCGAGTGATTATGTCTGGCGCCGCTCCTGTGGGAAAGGAACTTGAGGATTCTGTTAGGGCCAAACTTCCCAACGCCATTCTTGGACAGGGTTATGGGATGACAGAAGCAGGACCAGTGCTTTCAATGTGCTTAGCGTTTGCGAAGGAAGCAGGGCATGTGAAATCAGGTTCGTGCGGGACCGTTGTAAGAAATGCAGAGATGAAGATCGTTGACCCTCTCACTGGTGCTTCGCTGCACACAAATCAAGCTGGTGAGATTTGCATCAGAGGCAACCAGATCATGAAAGGTTACCTAAACGATGAAGAAGCCACAAAAATAACTATAGACGAAGAAGGATGGTTGCATACGGGTGATATTGGATACATCGACGATGATGACCAGATTTTCATCGTTGATCGGTTGAAGGAGTTGATCAAATACAAAGGATTTCAGGTTGCTCCTGCTGAGCTCGAAGCCATGCTAATTGTGCACCCAAAGATTTCTGATGCTGCCGTTGTCTCCATGAAGGATGAAGCTGCAGGAGAGGTTCCGGTTGCGTTTGTTGTACTATCAAATGGTTCTAAGATCTCTGAGGAAGAAATCAAGCAGTACATCTCAAAGCAGGTTGTGTTTTACAAAAGAATCGGTAGAGTTTTCTTTGTGAGTTCAATTCCGAAGGCAGCCTCTGGAAAGATCTTGCGAAGAGAACTGAGGGCAAGGCTTGAAAATGGTCTTCTTTCATTGTGA 1821 0.4931 KPNLRNESRQNILTQETTTHITQQQLSHHIIFPSTISSSLPFTFSTTQTNNVATTTEMEQKQSTQHHNHDFIFRSKLPDIYIPTHLPLHTYIFQNISQFNHRPCLINAATGECFTYAHVQLTARRVAAGLNKLGIQHGDVILLLLQNCPQFVFAFLGSSFCGATVTTANPFYTPAEVAKQAAASNAKLIITQASYVDKVKDFARENDVRVMCVDGAPPLEGFLQFSELTKANENDIPGVKISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGENPNLYIRSKDVVLCVLPLFHIYSLNTVLLCSLRVGAAVLIMPKFDIVKLMELVEKHKVSVAPFVPPIILAIAKSQDLQRYDLSSIRVIMSGAAPVGKELEDSVRAKLPNAILGQGYGMTEAGPVLSMCLAFAKEAGHVKSGSCGTVVRNAEMKIVDPLTGASLHTNQAGEICIRGNQIMKGYLNDEEATKITIDEEGWLHTGDIGYIDDDDQIFIVDRLKELIKYKGFQVAPAELEAMLIVHPKISDAAVVSMKDEAAGEVPVAFVVLSNGSKISEEEIKQYISKQVVFYKRIGRVFFVSSIPKAASGKILRRELRARLENGLLSL 606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3625g00005 606 ProSitePatterns Putative AMP-binding domain signature. 249 260 IPR020845 -
Vium3625g00005 606 Gene3D - 500 603 IPR045851 -
Vium3625g00005 606 FunFam Long-chain-fatty-acid--CoA ligase FadD 74 500 - -
Vium3625g00005 606 SUPERFAMILY Acetyl-CoA synthetase-like 64 602 - -
Vium3625g00005 606 CDD 4CL 82 595 - -
Vium3625g00005 606 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 69 597 - -
Vium3625g00005 606 Pfam AMP-binding enzyme 95 505 IPR000873 -
Vium3625g00005 606 Gene3D - 62 499 IPR042099 -
Vium3625g00005 606 FunFam 4-coumarate--CoA ligase 2 501 602 - -
Vium3625g00005 606 Pfam AMP-binding enzyme C-terminal domain 514 589 IPR025110 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3625g00005 Vium-Chr3625 59037 63814 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3625g00005 56 567 Monolignol Biosynthesis Gene Families AT1G51680 68.340 0.0 712
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3625g00005 K01904 - gmx:100780741 890.567