Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3625g00004 ATGCATATAAATAAGCATTGTAACCAAATAACAAACCCAAGCTTCTGTTGCTCTCCTTCCATCTCCCTTCGACCTTTCACACCCACAAACAAACACATTTGCCTGCCACCAACCCAAATGGAACAACAACAATCTACACAACACCAAAACCATGACTTCATTTTCCGTTCCAAACTCCCCGACATCTACATTCCCACGCACCTCCCTCTCCACACTTACATCTTCCAAAACATCTCCCAATTCAACCACCGACCCTGCCTCATCAACGCCGCCACCGGGGAATGCTTCACCTATGCCGACGTTCAACTCACCGCTCTCAGAGTCGCCGCCGGCCTCAACAAACTCGGCATCCACCACGGCGACGTCATCCTCCTTCTCCTCCGGAACTGCCCTCAGTTCGTCTTCGCATTTCTGGGCTCCTCCATCTGCGGCGCCACCATCACCACCGCTAACCCCTTCTACACTCCGGCGGAGGTGGCCAAGCAAGCCGCGGCCTCCAGCGCCAAACTCATCATAACGCAGGCGTCCTACGTGGACAAAGTGAAGGATTTCGCGAGGGAAAACGACGTCAGAGTGATGTGCGTCGATGCGGCGCCGGAAGGTTACCTTCACTTCTCGGAGTTGACGGAGGCAAACGAGAAAGACATTCCCGGTGTTAAAATATTCCCGGACGACGTGGTTGCGCTGCCGTATTCTTCAGGAACGACGGGGATTCCGAAGGGAGTGATGATAACGCACAAGGGGATAGTTACGAGCGTGGCGCAACAAGTGGATGGAGAGAACCCGAATGTGTATATGCGGAGCGAGGACGTGGTGTTGTGCGTGCTTCCACTTTTCCATATGTATGCCCTCAACAGTGTTTTGCTCTGTTCTCTTCGAGTTGGGGCTACCGTTTTGATAATGCCCGAATTTGACATTGTTAAGTTGATAGAGTTGGTTGAAAAACAGAGGGTAAGCGTGGCGGCGTTTGTGCCACCCATCGTACTCTCGATTGCGAAGAGTCCAGACTTGCAGCGATACGACCTGTCGTCGATTCGAATGATTATATGTGGTGCAGCACCAGTGGGAGAGAAACTTGAGAATTGTATGAGGGCGAAACTACCCAACGCCATATTCGGTCAGGGTTACGGGATGACAGAGGCATTAGCTATTTCGTTCTGCTTATCCTTTGCGAAGGAAGGAGTGGAAATGAAATCAGGTTCGAGCGGGTGCGTGCTAAGAAACGCGGAGATGAAGATCGTTCACCCTCACACTGGAGCTTCGCTCCGTAGGAATAAAGCAGGTGAGATTTGCATCAGAGGCAACCAGATCATGAAAGGTTACCTAAACGACGAAGAGGCGACAAAAAATACAATAGATAGGGAGGGATGGTTGCATACGGGTGATATTGGGTACATCGATGATGATGATGAACTTTTCATCGTTGATCGATTAAAGGAGTTGATCAAATACAAAGGATTTCAAGTGGCTCCAGCGGAGTTGGAAGCCATTCTAATTGCTCACCCCAATATTTCAGATGCTGCTATTGTATCCATGAAGGATGAAGTTGCAGGAGAAGTTCCAGTGGCTTTTGTTGTAAGATCAAAAGGTTCTAATATATCTGAGCAAGAAATCAAGCAATACATCTCAAACAAGGTTGTGTTTTATAAAAGAATCAGCAGGGTTTTCTTTGTGGGCTCCATTCCAAAGTCTGCCTCTGGAAAGATCTTGCGAAGAGAAATCATGGCAAGGCTTTGA 1737 0.4893 MHINKHCNQITNPSFCCSPSISLRPFTPTNKHICLPPTQMEQQQSTQHQNHDFIFRSKLPDIYIPTHLPLHTYIFQNISQFNHRPCLINAATGECFTYADVQLTALRVAAGLNKLGIHHGDVILLLLRNCPQFVFAFLGSSICGATITTANPFYTPAEVAKQAAASSAKLIITQASYVDKVKDFARENDVRVMCVDAAPEGYLHFSELTEANEKDIPGVKIFPDDVVALPYSSGTTGIPKGVMITHKGIVTSVAQQVDGENPNVYMRSEDVVLCVLPLFHMYALNSVLLCSLRVGATVLIMPEFDIVKLIELVEKQRVSVAAFVPPIVLSIAKSPDLQRYDLSSIRMIICGAAPVGEKLENCMRAKLPNAIFGQGYGMTEALAISFCLSFAKEGVEMKSGSSGCVLRNAEMKIVHPHTGASLRRNKAGEICIRGNQIMKGYLNDEEATKNTIDREGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEAILIAHPNISDAAIVSMKDEVAGEVPVAFVVRSKGSNISEQEIKQYISNKVVFYKRISRVFFVGSIPKSASGKILRREIMARL 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3625g00004 578 Gene3D - 479 578 IPR045851 -
Vium3625g00004 578 Pfam AMP-binding enzyme C-terminal domain 493 568 IPR025110 -
Vium3625g00004 578 SUPERFAMILY Acetyl-CoA synthetase-like 38 577 - -
Vium3625g00004 578 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 50 574 - -
Vium3625g00004 578 Gene3D - 44 478 IPR042099 -
Vium3625g00004 578 CDD 4CL 64 573 - -
Vium3625g00004 578 ProSitePatterns Putative AMP-binding domain signature. 229 240 IPR020845 -
Vium3625g00004 578 FunFam Long-chain-fatty-acid--CoA ligase FadD 56 479 - -
Vium3625g00004 578 FunFam 4-coumarate--CoA ligase 2 480 578 - -
Vium3625g00004 578 Pfam AMP-binding enzyme 77 484 IPR000873 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3625g00004 Vium-Chr3625 41052 47257 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3625g00004 40 546 Monolignol Biosynthesis Gene Families AT1G51680 63.372 0.0 658
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3625g00004 K01904 - gmx:100780741 848.58