Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3625g00003 ATGCCACCAACACCAACAATGGAACCTTCTCCACAAGAATTCATCTTCAGATCCCCACTTCCTGATATTCCCATTCCCACGCACCTTCCACTACACTCTTACTGCTTCCAAAACCTCTCCCAATTCCAACACCGAACATGCCTTATCGACGGCGACACCGGCGAAACACTCACCTACGCCGAAGTCGACCTCGCAGCCCGCCGCATCGCCGCCGGTCTCCACAACATCGGCATCCGCCAGGGTGACGTCGTCATGCTCGTCCTCCGCAACTGCCCCCAATTCGCCCTCGCCTTCCTCGGCGCCTCCCACCGCGGCGCCGTCATCACCACTGCCAACCCCTTCTACACTCCGCAGGAGCTGGCCAAGCAAGCCACCGCCACCAAAACCAGGCTCGTCATAACACAATCCGCGTACGTGGACAAAATCAAGAGCTTCGCCGACGGCACTGACGTCATGGTCATGTGCATCGATACATGTCCCCCTGAGAACGACGGCGTTTTGCATTTCTCCACGCTAACTAACGCCGACGAAACGGAAGCCCCCGCCGTTAAGATTAGCCCTGACGACGTCGTCGCGCTTCCGTTTTCTTCTGGCACTTCGGGGCTCCCCAAGGGCGTTATGTTGTCGCATAAAAACTTGGTCACCACTATCTCGCAGTTAGTTGACGGCGAAAACGCGCACCAGTACACTCACAGCGACGATGTGCTCCTCTGCGTGCTGCCTATGTTTCATATCTATGCTCTAAATTCAATTTTACTCTCCGGGATTCGATCCGGTGCGGCCGTTCTCATTGTACAGAAGTTTGAGATGACGACTCTGTTGGAGCTGATCCAGAAGTACAGGGTAACCGTTGCGTCGTTTGTGCCACCCATCGTTTTGGCGTTGGTTAAGAGCGGAGAGGCCCACCGATACGACCTCTCGTCCGTTCGAGCCGTCGTCACCGGCGCCGCACCCTTGGGAAAGGAACTACAAGAAGCTGTGGAATCAAGGCTACCACACGCCACTTTCGGACAGGGGTATGGGATGACAGAAGCAGGACCACTTGCGATTAGCATGGCATTTGCAAAAGAACCCTCAAAGATAAAACCTGGTGCATGCGGAACCGTTGTCAGAAACGCTGAGATGAAAATCGTCGACACAGAAACTGGTGTTTCTCTTCCCAGAAACGAAACCGGTGAAATTTGCATAAGAGGCACAAAGGTTATGAAAGGATATCTAAACGACCCAGAGGCTACAGAGAGAACCATAGACAAAGATGGATGGCTCCACACAGGAGATATTGGTTACATCGACGATGATGACGAACTCTTCATTGTTGATAGGTTAAAGGAATTGATCAAATACAAAGGGTTCCAAGTACCTCCCGCTGAGCTCGAAGCTTTGTTAATTTCTCACCCAGACATCTCTGAAGCTGCCGTTGTACCCATGAAAGATGAAGCTGCGGGAGAAATTCCTGTTGCATTTGTAGTAAGATCAAAAGGTTCTGAGATCACTGAAGATGAGATAAAGAAATACATTTCACAACAGGTGGTGTTTTACAAGAGAATTGGTCGGGTTTTCTTCACAGACTCTATTCCTAAAGCAGCCTCAGGCAAAATTCTGAGGAAGGTACTAAGTGCAAGAGTTAACGAAGGTGTGGTGGTGGCCAATTAG 1653 0.5124 MPPTPTMEPSPQEFIFRSPLPDIPIPTHLPLHSYCFQNLSQFQHRTCLIDGDTGETLTYAEVDLAARRIAAGLHNIGIRQGDVVMLVLRNCPQFALAFLGASHRGAVITTANPFYTPQELAKQATATKTRLVITQSAYVDKIKSFADGTDVMVMCIDTCPPENDGVLHFSTLTNADETEAPAVKISPDDVVALPFSSGTSGLPKGVMLSHKNLVTTISQLVDGENAHQYTHSDDVLLCVLPMFHIYALNSILLSGIRSGAAVLIVQKFEMTTLLELIQKYRVTVASFVPPIVLALVKSGEAHRYDLSSVRAVVTGAAPLGKELQEAVESRLPHATFGQGYGMTEAGPLAISMAFAKEPSKIKPGACGTVVRNAEMKIVDTETGVSLPRNETGEICIRGTKVMKGYLNDPEATERTIDKDGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVPPAELEALLISHPDISEAAVVPMKDEAAGEIPVAFVVRSKGSEITEDEIKKYISQQVVFYKRIGRVFFTDSIPKAASGKILRKVLSARVNEGVVVAN 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3625g00003 550 ProSitePatterns Putative AMP-binding domain signature. 193 204 IPR020845 -
Vium3625g00003 550 FunFam 4-coumarate--CoA ligase 2 444 545 - -
Vium3625g00003 550 Gene3D - 10 442 IPR042099 -
Vium3625g00003 550 Pfam AMP-binding enzyme 38 448 IPR000873 -
Vium3625g00003 550 Pfam AMP-binding enzyme C-terminal domain 457 532 IPR025110 -
Vium3625g00003 550 FunFam Long-chain-fatty-acid--CoA ligase FadD 17 443 - -
Vium3625g00003 550 CDD 4CL 25 538 - -
Vium3625g00003 550 Gene3D - 443 547 IPR045851 -
Vium3625g00003 550 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 12 539 - -
Vium3625g00003 550 SUPERFAMILY Acetyl-CoA synthetase-like 10 544 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3625g00003 Vium-Chr3625 34686 39645 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3625g00003 13 510 Monolignol Biosynthesis Gene Families AT1G51680 65.545 0.0 659
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3625g00003 K01904 - gmx:548034 963.37