Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3625g00002 ATGTCCCTCTATCTCACTCAATACCCTCACTCTTTCACTCAATATACTACTATTTCTGTCTGCAGGAACAGTGAACCTTTCAGCCTCTTATATTACATAAACATCCTCTCTCACCCCCCCACTTCGCACCCTATATCCTTTCCTCTCTATTGCTTTCTTTCCCACACTACTTTGCTCCATATTCATTCTAGGAACCACTGCCACTACCTTCTACACCCTCTTATGGCCATGAATTTCCATCCCAATACTTCTCTTCACCTAAGCCAATCCGATGATGAGATCAATCACCTCAATCTAGATCTTCTTCTTGAGCCATCTTCTTCTTCTTCGTCTTCTCCCTCACCTATAAGTCCCATTGAGCCGCGGATATTCTCATGCAACTATTGCCAGAGAAAGTTTTATAGCTCTCAAGCGCTAGGGGGTCACCAAAATGCTCACAAGCTTGAGAGGACTCTAGCCAAGAAGAGCAGGGAAATGAGTTCAACCATGCAGTCTTACGGAGCACCGGAGCAAAGATCAAACTTCAGTCCTTCACACCATCTTGGTCGTGCTCTTGGGGTTAACGTTGTGGATAACCAAGGACAAAGCTATGTGAGGCTCGGCGGAAGAAAAGAATACAGCTTTGGAAGCAAGGAAGGAGTGGCTTCCTGGTCAAGGGGTTATGCTTCTGAGCATGTTCAGGAGGATATTGGCCAACTTGACTTGTCGTTGAGGCTTTGA 720 0.4569 MSLYLTQYPHSFTQYTTISVCRNSEPFSLLYYINILSHPPTSHPISFPLYCFLSHTTLLHIHSRNHCHYLLHPLMAMNFHPNTSLHLSQSDDEINHLNLDLLLEPSSSSSSSPSPISPIEPRIFSCNYCQRKFYSSQALGGHQNAHKLERTLAKKSREMSSTMQSYGAPEQRSNFSPSHHLGRALGVNVVDNQGQSYVRLGGRKEYSFGSKEGVASWSRGYASEHVQEDIGQLDLSLRL 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3625g00002 239 Gene3D Classic Zinc Finger 116 178 - -
Vium3625g00002 239 ProSiteProfiles Zinc finger C2H2 type domain profile. 124 151 IPR013087 -
Vium3625g00002 239 ProSitePatterns Zinc finger C2H2 type domain signature. 126 146 IPR013087 -
Vium3625g00002 239 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 88 187 IPR044246 GO:0009788
Vium3625g00002 239 SUPERFAMILY beta-beta-alpha zinc fingers 121 151 IPR036236 -
Vium3625g00002 239 FunFam Zinc finger protein 2 103 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3625g00002 Vium-Chr3625 13599 14886 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3625g00002 77 239 C2H2 Transcription Factor Family AT5G57520 46.821 1.52e-27 101
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3625g00002 - - vra:106768043 419.468