Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3620g00011 ATGGAGAGTAAACCAAATATCTTAATGCAAAGATATGAGTTAGGAAGATTACTCGGTCAGGGAACCTTTGGAAAAGTTTACTATGGTAGAAGTGCAATAACTAACCAGAGTGTGGCTATTAAAATGATTGACAAAGATAAGATTATGAGAACGGGGCAAGTTGAACAAATCAGGCGTGAAATATCTGTTATGAGATTGACTAGACACCCCAATATTATTCAGCTGTTTGAGGTTATGGCTAACAAGAGTAAGATTTATTTTGTTATGGAGTATGCCAAAGGTGGTGAGCTCTTCAACAAGGTGGCCAAAGGAAAACTGAAGGAAGATGTGGCACACAAGTATTTTAAGCAGCTAATTAATGCTGTGGATTATTGTCACAGTAGAGGTGTGTTCCACAGAGACATAAAGCCTGAGAACATTCTATTGGATGAAAATGGAAATCTAAAGGTCTCTGATTTCGGATTAAGTGCTCTTGTTGAATCCAAGAGGCAAGATGGTTTACTACATACCCCTTGTGGCACACCTGCTTATGTTGCTCCTGAAGTCATTAAAAGGAAGGGATATGATGGCACAAAAGCTGATATATGGTCTTGTGGAATAGTTCTGTTTGTCTTGTTAGCAGGTTATCTCCCTTTTCATGACCCAAATTTGATAGAGATGTATAGGAAGATAAGCAAAGCAGAATTAAAATGCCCTAATTGGTTCCCACCTGATGTATGCAAGCTATTGGGCATGATGTTGGATCCAAATCCTGACGCTAGGATTCCCATATCTATCATTAGGGAACATTGTTGGTTTAAGAAAGAACCTAACGTTAAAAACAAAAGACCTGTAGTGGAAAACAATACTGTCTCTTCTTCAGGTACTGTTCTTCCTGATCAAACTGATTGCTGTGATGGTTTAGCAGCAGAAGCAAACGGAGAGTCAGTTGCTCCCTTAAGTATAAATGCCTTTGATATTATCTCCCGTTCTCCGGGTTTTGATCTTTCTAGATTCTTTGATGACAGTTTCCGGATAAAGGAAGCAAGATTTAGTTCAAGGTTACCTGCAAATGTCATCATCTCCAAGCTGGAAGACATTGCTAAGCAACTGAGGATGAAAATAAAGAAAAAGGCTGCGGGTTTGTTGAAATTAGAGGGCTTGGAGGAAGGTAGGAAGGGGGTTTTAACCATTGATGCAGAGATCTTTGAAGTTACACCTTGTTTCCATTTGGTGGAGGTAAAAAAATCAAATGGAGACACAATGGAGTATCAGAAAATATTGAAAGAGGATATCAGGCCTGCTCTTCAGGACATTGTTTGGGTCTGGCAAAGTGACCAACAACTGCAATCACAACCGTCAGAGCAAGAACTGCAACAGACAGATGATCAGCAGCAACAACAATCACAGTCATAG 1395 0.3964 MESKPNILMQRYELGRLLGQGTFGKVYYGRSAITNQSVAIKMIDKDKIMRTGQVEQIRREISVMRLTRHPNIIQLFEVMANKSKIYFVMEYAKGGELFNKVAKGKLKEDVAHKYFKQLINAVDYCHSRGVFHRDIKPENILLDENGNLKVSDFGLSALVESKRQDGLLHTPCGTPAYVAPEVIKRKGYDGTKADIWSCGIVLFVLLAGYLPFHDPNLIEMYRKISKAELKCPNWFPPDVCKLLGMMLDPNPDARIPISIIREHCWFKKEPNVKNKRPVVENNTVSSSGTVLPDQTDCCDGLAAEANGESVAPLSINAFDIISRSPGFDLSRFFDDSFRIKEARFSSRLPANVIISKLEDIAKQLRMKIKKKAAGLLKLEGLEEGRKGVLTIDAEIFEVTPCFHLVEVKKSNGDTMEYQKILKEDIRPALQDIVWVWQSDQQLQSQPSEQELQQTDDQQQQQSQS 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3620g00011 464 Gene3D Kinase associated domain 1, KA1 310 435 - -
Vium3620g00011 464 SMART serkin_6 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3620g00011 464 Pfam Protein kinase domain 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3620g00011 464 SUPERFAMILY Protein kinase-like (PK-like) 8 267 IPR011009 -
Vium3620g00011 464 ProSitePatterns Serine/Threonine protein kinases active-site signature. 130 142 IPR008271 GO:0004672|GO:0006468
Vium3620g00011 464 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 6 429 - -
Vium3620g00011 464 FunFam Non-specific serine/threonine protein kinase 310 434 - -
Vium3620g00011 464 CDD CIPK_C 316 430 - -
Vium3620g00011 464 ProSitePatterns Protein kinases ATP-binding region signature. 18 41 IPR017441 GO:0005524
Vium3620g00011 464 FunFam Non-specific serine/threonine protein kinase 3 91 - -
Vium3620g00011 464 Pfam NAF domain 312 370 IPR004041 GO:0007165
Vium3620g00011 464 ProSiteProfiles Protein kinase domain profile. 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3620g00011 464 FunFam Non-specific serine/threonine protein kinase 92 273 - -
Vium3620g00011 464 MobiDBLite consensus disorder prediction 445 464 - -
Vium3620g00011 464 ProSiteProfiles NAF domain profile. 310 334 IPR018451 GO:0007165
Vium3620g00011 464 Gene3D Transferase(Phosphotransferase) domain 1 3 304 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3620g00011 Vium-Chr3620 112834 115594 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3620g00011 1 440 CBL-interacting serine-threonine protein kinases AT5G58380 65.487 0.0 619
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Vium3620g00011 Pkinase 8.2e-75 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3620g00011 - K07198 gmx:100790905 770.385