Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vium3620g00007 | ATGGAGATATCATTGTTAAAAATGATAGTAAATGGCATATCCTCGTTTTTGCATTTATCAATTTCTGGAAACAAGAGCTCTGAACCTGTCTCAAAGTATTACCACAAGGCAGAGGAGATACTTAAGCTGTTGAAGCCAATCATTGATGAGATTGTTAATTCTGAGTTAGCTTCTGATGAAGTGCTTAATAAGATATTGGAAGAAATTGGTCTTGCTGTTAATGAATTAAAGGAGCATGTCGAGAACTGGCACCTATTGTCTAGCAAAGTATACTTTGTTTTGCAAGTTGAACCCCTGATATCAAGAATTCGCACTTCAGGGCTCAATATTTTCCAGCAGCTGAAGGTTTCTCAGCATTCTCTCCCTGATGAATTGAGTTCTGAAGATTTACAGCAATGTTCACATAAACTTAAGCTTTTGGGGCATGAAGAAACCTCATCAGTTATTAAGGAAGCTATTGCAGCACAACTGGAATATGCAGGACCCAGTCCAGAGGTCCTGACAAAAATTGCTGATAGGCTGGACCTCATGTCTAATCAGGATGTTCTTATTGAGGCTGTGGCCCTTGAAAGATTGAAGGAAAATGCTGAACAATCTGAAAAGACTGATGAGGCAGAATACATTGATCAAATGATTGCTGTCATAACACGTATGCTCGAGCGTCTCGTTATGGTTAAGCAAGCTCAGAGTAGCAGCCCAGTTCCAATACCGGCTGATTTTTGTTGTCCACTTTCTTTGGAGTTGATGACTGATCCTGTGATTGTGGCATCAGGACAAACATATGAACGAGCCTTCATCAAGAACTGGATTGATCTTGGGCTAACTGTTTGTCCAAAGACACGACAAACTTTGGCTCATACCAACCTAATACCTAATTATACTGTAAAAGCTCTAATTACAAATTGGTGTGAATCTAACAATGTGCAACTAGTTGATCCCACAAAATCCACAAATTTAAATCCACCATCCGTCCTTCATGGGTATATGGAATCCGGTACGACCAGGGAGTCTCCTGTTTTTGCTCATCCCAGGAGCAACCAGCCGTCCTCACCTGAGTCAGCACGTTCTCGTTCTTTTAGTTCACCAGGTAATAACATAACTTCTGTTGGCATTCAGCTAGAGGAAACAACATCACCTTTGCATCCCCGTTCTACTTCAGAAGGTTCCTTAAGTGGTATAATTAATGGACAATACATGGATCTTGCAAGAATATCTCCCGCTGGTTTGGATGACAGGTCTGCTAGCTCTGATGAAAGTACTGCGGATTCAGCTAGCCAGCCATCGATGTCACCATCTAGAAGGGAATCATCCAGTGCTTTTAGCTCTGAACAATCTCAAACCCATATTAGAGCTGTTTCTGACTCCAGTGCACTTTCTACTGCAAACTTTCCTCAAGAAACCCAAGATGATGACAACAATGCTCGGCTATCAATAAGTCCAGGCCACAGTAGAGATGCTTCTGGTGAATTAAATGCAGGGCCAGAAACTGCTAGTACTACTGTCATGCCATCAACACATAGAGAAGCTGAGTCCCCAGCCCGATTGTTAGAGGCAAGGCGAAATCAAGGCATATGGAGGCGGCCACCAGAAAGGCTTGTTCCTAGGATAACATCTCCTGCTATTGAAACAAGAGCTGATCTTTCAGGTATTGAAGCCCAGGTCCGGAATTTGGTTGACGGCCTGAGGAGCTCCGATCTTGATACTCAGAAAGAGGCAACAGCAGAACTCCGCCTTCTTGCAAAGCACAATATGGATAATAGAATTGCGATTGCAAACTGTGGAGCCATTAACTTATTAGTTGATTTACTTAGATCAGCTGATATAGCAATCCAAGAAAATGCTGTTACCGCACTTCTAAACTTATCAATCAATGATAACAACAAAACTGCAATTGCAAATGCTGGTGCAATTGAACCTCTGATTCACGTGCTTGAGACTGGGAGCGCAGAAGCCAAGGAGAATTCTGCTGCCACTCTTTTCAGCTTATCCGTGATTGAGGAAAACAAGATTTTCATAGGGAGGTCTGGGGCAATTAGACCACTGGTAGATTTATTGGGGAATGGAACCCCTAGGGGAAAGAAAGATGCTGCCACTGCTTTGTTTAATTTGTCAATATTTCATCAAAACAAGATTTCGATTGTGCAAGCTGGTGCTGTGAGGCACCTTGTGGAGTTAATGGACCCAGCAGCTGGAATGGTTGACAAGGCAGTGGCTGTCTTAGCAAATCTTGCCACAATTCCAGAAGGAAGAAACGCAATTGGTGAAGAAGGTGGGATTCCTGTGCTGGTTGAGGTTGTTGAGTTAGGTTCTGCGAGAGGAAAGGAGAATGCAGCCGCAGCTCTTCTACAGCTTTGTTTACATAGTAACAAATTTTTAGGCAAGGTGCTTCAACAAGGAGCTGTCCCACCGTTAGTAGCTTTATCTCAGTCAGGCACCCCAAGAGCCAAAGAAAAGGCCCAGGCTCTCCTCAATCAATTTAGAAGTCAAAGACATGGGAATGCTGGGAGGGGCTGA | 2514 | 0.4312 | MEISLLKMIVNGISSFLHLSISGNKSSEPVSKYYHKAEEILKLLKPIIDEIVNSELASDEVLNKILEEIGLAVNELKEHVENWHLLSSKVYFVLQVEPLISRIRTSGLNIFQQLKVSQHSLPDELSSEDLQQCSHKLKLLGHEETSSVIKEAIAAQLEYAGPSPEVLTKIADRLDLMSNQDVLIEAVALERLKENAEQSEKTDEAEYIDQMIAVITRMLERLVMVKQAQSSSPVPIPADFCCPLSLELMTDPVIVASGQTYERAFIKNWIDLGLTVCPKTRQTLAHTNLIPNYTVKALITNWCESNNVQLVDPTKSTNLNPPSVLHGYMESGTTRESPVFAHPRSNQPSSPESARSRSFSSPGNNITSVGIQLEETTSPLHPRSTSEGSLSGIINGQYMDLARISPAGLDDRSASSDESTADSASQPSMSPSRRESSSAFSSEQSQTHIRAVSDSSALSTANFPQETQDDDNNARLSISPGHSRDASGELNAGPETASTTVMPSTHREAESPARLLEARRNQGIWRRPPERLVPRITSPAIETRADLSGIEAQVRNLVDGLRSSDLDTQKEATAELRLLAKHNMDNRIAIANCGAINLLVDLLRSADIAIQENAVTALLNLSINDNNKTAIANAGAIEPLIHVLETGSAEAKENSAATLFSLSVIEENKIFIGRSGAIRPLVDLLGNGTPRGKKDAATALFNLSIFHQNKISIVQAGAVRHLVELMDPAAGMVDKAVAVLANLATIPEGRNAIGEEGGIPVLVEVVELGSARGKENAAAALLQLCLHSNKFLGKVLQQGAVPPLVALSQSGTPRAKEKAQALLNQFRSQRHGNAGRG | 837 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vium3620g00007 | 837 | MobiDBLite | consensus disorder prediction | 492 | 506 | - | - | |
Vium3620g00007 | 837 | Pfam | Armadillo/beta-catenin-like repeat | 624 | 663 | IPR000225 | GO:0005515 | |
Vium3620g00007 | 837 | Pfam | Armadillo/beta-catenin-like repeat | 667 | 704 | IPR000225 | GO:0005515 | |
Vium3620g00007 | 837 | Pfam | Armadillo/beta-catenin-like repeat | 585 | 622 | IPR000225 | GO:0005515 | |
Vium3620g00007 | 837 | ProSiteProfiles | Armadillo/plakoglobin ARM repeat profile. | 594 | 636 | IPR000225 | GO:0005515 | |
Vium3620g00007 | 837 | PANTHER | U BOX DOMAIN-CONTAINING | 29 | 826 | - | - | |
Vium3620g00007 | 837 | ProSiteProfiles | Armadillo/plakoglobin ARM repeat profile. | 676 | 718 | IPR000225 | GO:0005515 | |
Vium3620g00007 | 837 | MobiDBLite | consensus disorder prediction | 408 | 516 | - | - | |
Vium3620g00007 | 837 | FunFam | RING-type E3 ubiquitin transferase | 537 | 832 | - | - | |
Vium3620g00007 | 837 | SUPERFAMILY | RING/U-box | 226 | 313 | - | - | |
Vium3620g00007 | 837 | ProSiteProfiles | U-box domain profile. | 235 | 309 | IPR003613 | GO:0004842|GO:0016567 | |
Vium3620g00007 | 837 | SMART | Ubox_2 | 239 | 302 | IPR003613 | GO:0004842|GO:0016567 | |
Vium3620g00007 | 837 | Coils | Coil | 179 | 199 | - | - | |
Vium3620g00007 | 837 | ProSiteProfiles | Armadillo/plakoglobin ARM repeat profile. | 717 | 758 | IPR000225 | GO:0005515 | |
Vium3620g00007 | 837 | MobiDBLite | consensus disorder prediction | 412 | 480 | - | - | |
Vium3620g00007 | 837 | Gene3D | - | 535 | 832 | IPR011989 | - | |
Vium3620g00007 | 837 | SUPERFAMILY | ARM repeat | 554 | 826 | IPR016024 | - | |
Vium3620g00007 | 837 | CDD | RING-Ubox_PUB | 237 | 289 | IPR045210 | - | |
Vium3620g00007 | 837 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 216 | 315 | IPR013083 | - | |
Vium3620g00007 | 837 | MobiDBLite | consensus disorder prediction | 338 | 367 | - | - | |
Vium3620g00007 | 837 | FunFam | RING-type E3 ubiquitin transferase | 235 | 310 | - | - | |
Vium3620g00007 | 837 | SMART | arm_5 | 624 | 664 | IPR000225 | GO:0005515 | |
Vium3620g00007 | 837 | SMART | arm_5 | 706 | 745 | IPR000225 | GO:0005515 | |
Vium3620g00007 | 837 | SMART | arm_5 | 746 | 786 | IPR000225 | GO:0005515 | |
Vium3620g00007 | 837 | SMART | arm_5 | 537 | 581 | IPR000225 | GO:0005515 | |
Vium3620g00007 | 837 | SMART | arm_5 | 665 | 705 | IPR000225 | GO:0005515 | |
Vium3620g00007 | 837 | SMART | arm_5 | 583 | 623 | IPR000225 | GO:0005515 | |
Vium3620g00007 | 837 | Pfam | U-box domain | 236 | 306 | IPR003613 | GO:0004842|GO:0016567 | |
Vium3620g00007 | 837 | MobiDBLite | consensus disorder prediction | 314 | 367 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vium3620g00007 | Vium-Chr3620 | 62605 | 71241 | Dispersed/Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vium3620g00007 | 196 | 837 | U-box Gene Family | AT2G23140 | 62.308 | 0.0 | 730 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vium3620g00007 | - | - | gmx:100811250 | 1333.16 |