Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3620g00007 ATGGAGATATCATTGTTAAAAATGATAGTAAATGGCATATCCTCGTTTTTGCATTTATCAATTTCTGGAAACAAGAGCTCTGAACCTGTCTCAAAGTATTACCACAAGGCAGAGGAGATACTTAAGCTGTTGAAGCCAATCATTGATGAGATTGTTAATTCTGAGTTAGCTTCTGATGAAGTGCTTAATAAGATATTGGAAGAAATTGGTCTTGCTGTTAATGAATTAAAGGAGCATGTCGAGAACTGGCACCTATTGTCTAGCAAAGTATACTTTGTTTTGCAAGTTGAACCCCTGATATCAAGAATTCGCACTTCAGGGCTCAATATTTTCCAGCAGCTGAAGGTTTCTCAGCATTCTCTCCCTGATGAATTGAGTTCTGAAGATTTACAGCAATGTTCACATAAACTTAAGCTTTTGGGGCATGAAGAAACCTCATCAGTTATTAAGGAAGCTATTGCAGCACAACTGGAATATGCAGGACCCAGTCCAGAGGTCCTGACAAAAATTGCTGATAGGCTGGACCTCATGTCTAATCAGGATGTTCTTATTGAGGCTGTGGCCCTTGAAAGATTGAAGGAAAATGCTGAACAATCTGAAAAGACTGATGAGGCAGAATACATTGATCAAATGATTGCTGTCATAACACGTATGCTCGAGCGTCTCGTTATGGTTAAGCAAGCTCAGAGTAGCAGCCCAGTTCCAATACCGGCTGATTTTTGTTGTCCACTTTCTTTGGAGTTGATGACTGATCCTGTGATTGTGGCATCAGGACAAACATATGAACGAGCCTTCATCAAGAACTGGATTGATCTTGGGCTAACTGTTTGTCCAAAGACACGACAAACTTTGGCTCATACCAACCTAATACCTAATTATACTGTAAAAGCTCTAATTACAAATTGGTGTGAATCTAACAATGTGCAACTAGTTGATCCCACAAAATCCACAAATTTAAATCCACCATCCGTCCTTCATGGGTATATGGAATCCGGTACGACCAGGGAGTCTCCTGTTTTTGCTCATCCCAGGAGCAACCAGCCGTCCTCACCTGAGTCAGCACGTTCTCGTTCTTTTAGTTCACCAGGTAATAACATAACTTCTGTTGGCATTCAGCTAGAGGAAACAACATCACCTTTGCATCCCCGTTCTACTTCAGAAGGTTCCTTAAGTGGTATAATTAATGGACAATACATGGATCTTGCAAGAATATCTCCCGCTGGTTTGGATGACAGGTCTGCTAGCTCTGATGAAAGTACTGCGGATTCAGCTAGCCAGCCATCGATGTCACCATCTAGAAGGGAATCATCCAGTGCTTTTAGCTCTGAACAATCTCAAACCCATATTAGAGCTGTTTCTGACTCCAGTGCACTTTCTACTGCAAACTTTCCTCAAGAAACCCAAGATGATGACAACAATGCTCGGCTATCAATAAGTCCAGGCCACAGTAGAGATGCTTCTGGTGAATTAAATGCAGGGCCAGAAACTGCTAGTACTACTGTCATGCCATCAACACATAGAGAAGCTGAGTCCCCAGCCCGATTGTTAGAGGCAAGGCGAAATCAAGGCATATGGAGGCGGCCACCAGAAAGGCTTGTTCCTAGGATAACATCTCCTGCTATTGAAACAAGAGCTGATCTTTCAGGTATTGAAGCCCAGGTCCGGAATTTGGTTGACGGCCTGAGGAGCTCCGATCTTGATACTCAGAAAGAGGCAACAGCAGAACTCCGCCTTCTTGCAAAGCACAATATGGATAATAGAATTGCGATTGCAAACTGTGGAGCCATTAACTTATTAGTTGATTTACTTAGATCAGCTGATATAGCAATCCAAGAAAATGCTGTTACCGCACTTCTAAACTTATCAATCAATGATAACAACAAAACTGCAATTGCAAATGCTGGTGCAATTGAACCTCTGATTCACGTGCTTGAGACTGGGAGCGCAGAAGCCAAGGAGAATTCTGCTGCCACTCTTTTCAGCTTATCCGTGATTGAGGAAAACAAGATTTTCATAGGGAGGTCTGGGGCAATTAGACCACTGGTAGATTTATTGGGGAATGGAACCCCTAGGGGAAAGAAAGATGCTGCCACTGCTTTGTTTAATTTGTCAATATTTCATCAAAACAAGATTTCGATTGTGCAAGCTGGTGCTGTGAGGCACCTTGTGGAGTTAATGGACCCAGCAGCTGGAATGGTTGACAAGGCAGTGGCTGTCTTAGCAAATCTTGCCACAATTCCAGAAGGAAGAAACGCAATTGGTGAAGAAGGTGGGATTCCTGTGCTGGTTGAGGTTGTTGAGTTAGGTTCTGCGAGAGGAAAGGAGAATGCAGCCGCAGCTCTTCTACAGCTTTGTTTACATAGTAACAAATTTTTAGGCAAGGTGCTTCAACAAGGAGCTGTCCCACCGTTAGTAGCTTTATCTCAGTCAGGCACCCCAAGAGCCAAAGAAAAGGCCCAGGCTCTCCTCAATCAATTTAGAAGTCAAAGACATGGGAATGCTGGGAGGGGCTGA 2514 0.4312 MEISLLKMIVNGISSFLHLSISGNKSSEPVSKYYHKAEEILKLLKPIIDEIVNSELASDEVLNKILEEIGLAVNELKEHVENWHLLSSKVYFVLQVEPLISRIRTSGLNIFQQLKVSQHSLPDELSSEDLQQCSHKLKLLGHEETSSVIKEAIAAQLEYAGPSPEVLTKIADRLDLMSNQDVLIEAVALERLKENAEQSEKTDEAEYIDQMIAVITRMLERLVMVKQAQSSSPVPIPADFCCPLSLELMTDPVIVASGQTYERAFIKNWIDLGLTVCPKTRQTLAHTNLIPNYTVKALITNWCESNNVQLVDPTKSTNLNPPSVLHGYMESGTTRESPVFAHPRSNQPSSPESARSRSFSSPGNNITSVGIQLEETTSPLHPRSTSEGSLSGIINGQYMDLARISPAGLDDRSASSDESTADSASQPSMSPSRRESSSAFSSEQSQTHIRAVSDSSALSTANFPQETQDDDNNARLSISPGHSRDASGELNAGPETASTTVMPSTHREAESPARLLEARRNQGIWRRPPERLVPRITSPAIETRADLSGIEAQVRNLVDGLRSSDLDTQKEATAELRLLAKHNMDNRIAIANCGAINLLVDLLRSADIAIQENAVTALLNLSINDNNKTAIANAGAIEPLIHVLETGSAEAKENSAATLFSLSVIEENKIFIGRSGAIRPLVDLLGNGTPRGKKDAATALFNLSIFHQNKISIVQAGAVRHLVELMDPAAGMVDKAVAVLANLATIPEGRNAIGEEGGIPVLVEVVELGSARGKENAAAALLQLCLHSNKFLGKVLQQGAVPPLVALSQSGTPRAKEKAQALLNQFRSQRHGNAGRG 837
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3620g00007 837 MobiDBLite consensus disorder prediction 492 506 - -
Vium3620g00007 837 Pfam Armadillo/beta-catenin-like repeat 624 663 IPR000225 GO:0005515
Vium3620g00007 837 Pfam Armadillo/beta-catenin-like repeat 667 704 IPR000225 GO:0005515
Vium3620g00007 837 Pfam Armadillo/beta-catenin-like repeat 585 622 IPR000225 GO:0005515
Vium3620g00007 837 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 594 636 IPR000225 GO:0005515
Vium3620g00007 837 PANTHER U BOX DOMAIN-CONTAINING 29 826 - -
Vium3620g00007 837 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 676 718 IPR000225 GO:0005515
Vium3620g00007 837 MobiDBLite consensus disorder prediction 408 516 - -
Vium3620g00007 837 FunFam RING-type E3 ubiquitin transferase 537 832 - -
Vium3620g00007 837 SUPERFAMILY RING/U-box 226 313 - -
Vium3620g00007 837 ProSiteProfiles U-box domain profile. 235 309 IPR003613 GO:0004842|GO:0016567
Vium3620g00007 837 SMART Ubox_2 239 302 IPR003613 GO:0004842|GO:0016567
Vium3620g00007 837 Coils Coil 179 199 - -
Vium3620g00007 837 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 717 758 IPR000225 GO:0005515
Vium3620g00007 837 MobiDBLite consensus disorder prediction 412 480 - -
Vium3620g00007 837 Gene3D - 535 832 IPR011989 -
Vium3620g00007 837 SUPERFAMILY ARM repeat 554 826 IPR016024 -
Vium3620g00007 837 CDD RING-Ubox_PUB 237 289 IPR045210 -
Vium3620g00007 837 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 216 315 IPR013083 -
Vium3620g00007 837 MobiDBLite consensus disorder prediction 338 367 - -
Vium3620g00007 837 FunFam RING-type E3 ubiquitin transferase 235 310 - -
Vium3620g00007 837 SMART arm_5 624 664 IPR000225 GO:0005515
Vium3620g00007 837 SMART arm_5 706 745 IPR000225 GO:0005515
Vium3620g00007 837 SMART arm_5 746 786 IPR000225 GO:0005515
Vium3620g00007 837 SMART arm_5 537 581 IPR000225 GO:0005515
Vium3620g00007 837 SMART arm_5 665 705 IPR000225 GO:0005515
Vium3620g00007 837 SMART arm_5 583 623 IPR000225 GO:0005515
Vium3620g00007 837 Pfam U-box domain 236 306 IPR003613 GO:0004842|GO:0016567
Vium3620g00007 837 MobiDBLite consensus disorder prediction 314 367 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3620g00007 Vium-Chr3620 62605 71241 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3620g00007 196 837 U-box Gene Family AT2G23140 62.308 0.0 730
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3620g00007 - - gmx:100811250 1333.16