Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3620g00006 ATGGCTTCCTCTTTCTCTTCATTAGCTAACATTGTTGCATTAGCTGTCTTATTACTGCTTCTTACTGCAGGAACTTCTTCGGCTAACCTCTCAAACAACTTCTATTCTAAGAGATGTCCCAATGTTTTCAACACAGTCAAATCTGTCGTTAAATCTGCTGTGGCAAAAGAACCTCGCATTGGAGCATCGATTCTTCGCCTCTTCTTCCATGATTGCTTTGTTAATGGTTGTGATGGGTCATTACTGCTTGATGACACTGCATCGTTCTTGGGAGAGAAAACTGCAGCTGCTAACAACAATTCAGTGAGAGGTTTTGAAGTAATTGATGCCATCAAGTCTAGGGTGGAGAAACTGTGCCCTGGTGTTGTCTCCTGTGCTGATATCTTGGCCATTGCTTCCCGTGATTCTGTCGTCCTTCTCGGAGGACCATTTTGGAAAGTGAAGGTTGGAAGAAGGGATTCTAGAACAGCAAATTTCACTGCTGCTAACACTGGTGTTATTCCACCTCCTACCTCTAATCTGACCAACCTTATTAACACGTTTCAAGCTCAAGGACTCTCTACTAAAGACATGGTTGCCTTATCTGGAGCTCACACGATCGGAAAAGCAAGATGTACTAGTTTTAGAGATCACATATACAATGGAACTAACATTGACAGAAAATTTGCACTGCTGAGGCAGAGAAAGTGTCCTAGAACTAATGGCACAGGAGACAATAATCTAGCAGTTCTAGACTTGAGAACTCCGAAGCATTTTGACAACAACTACTTCAAGAACCTGCTGAACAAAAAGGGACTCCTGAATTCTGATCAGGTGCTTTTCAATGGTGGATCCACTGATTCGCTGGTCAGAACTTACAGTCAGAATAACAATGTCTTTGATTCTGACTTTGTCACAGCAATGATCAAGATGGGAGATATCAAACCCTTAACTGGGTCACGAGGAGAGATTAGGAAGAATTGCAGGAGAGTGAATTAA 978 0.4223 MASSFSSLANIVALAVLLLLLTAGTSSANLSNNFYSKRCPNVFNTVKSVVKSAVAKEPRIGASILRLFFHDCFVNGCDGSLLLDDTASFLGEKTAAANNNSVRGFEVIDAIKSRVEKLCPGVVSCADILAIASRDSVVLLGGPFWKVKVGRRDSRTANFTAANTGVIPPPTSNLTNLINTFQAQGLSTKDMVALSGAHTIGKARCTSFRDHIYNGTNIDRKFALLRQRKCPRTNGTGDNNLAVLDLRTPKHFDNNYFKNLLNKKGLLNSDQVLFNGGSTDSLVRTYSQNNNVFDSDFVTAMIKMGDIKPLTGSRGEIRKNCRRVN 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3620g00006 325 SUPERFAMILY Heme-dependent peroxidases 29 325 IPR010255 GO:0004601|GO:0006979|GO:0020037
Vium3620g00006 325 PRINTS Plant peroxidase signature 299 312 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium3620g00006 325 PRINTS Plant peroxidase signature 189 201 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium3620g00006 325 PRINTS Plant peroxidase signature 122 132 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium3620g00006 325 PRINTS Plant peroxidase signature 259 276 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium3620g00006 325 PRINTS Plant peroxidase signature 39 58 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium3620g00006 325 PRINTS Plant peroxidase signature 103 116 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium3620g00006 325 PRINTS Plant peroxidase signature 243 258 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium3620g00006 325 PRINTS Plant peroxidase signature 141 156 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium3620g00006 325 PRINTS Plant peroxidase signature 63 83 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium3620g00006 325 ProSitePatterns Peroxidases proximal heme-ligand signature. 190 200 IPR019793 -
Vium3620g00006 325 CDD secretory_peroxidase 29 324 IPR033905 GO:0004601|GO:0042744
Vium3620g00006 325 PRINTS Haem peroxidase superfamily signature 141 153 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium3620g00006 325 PRINTS Haem peroxidase superfamily signature 190 205 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium3620g00006 325 PRINTS Haem peroxidase superfamily signature 245 260 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium3620g00006 325 PRINTS Haem peroxidase superfamily signature 123 140 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium3620g00006 325 PRINTS Haem peroxidase superfamily signature 61 75 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium3620g00006 325 ProSitePatterns Peroxidases active site signature. 61 72 IPR019794 GO:0004601
Vium3620g00006 325 Gene3D - 33 325 - -
Vium3620g00006 325 ProSiteProfiles Plant heme peroxidase family profile. 29 325 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium3620g00006 325 FunFam Peroxidase 33 179 - -
Vium3620g00006 325 Pfam Peroxidase 46 289 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium3620g00006 325 Gene3D Peroxidase, domain 2 168 304 - -
Vium3620g00006 325 PANTHER PEROXIDASE 72-RELATED 27 324 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium3620g00006 325 FunFam Peroxidase 168 304 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3620g00006 Vium-Chr3620 52586 54712 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3620g00006 13 325 Peroxidase AT5G58400 67.834 1.22e-158 444
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3620g00006 K00430 - gmx:100813384 516.924