Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3620g00004 ATGGCTTCTCATCTCCAACACTTCCTTGTTCTTGCCATGGCCATACTTCTCACAATCCCTTCTCATGCACAGCAACTCAGTCCTGATTTTTACATGGCTTGCCCTCAGGCACTTCCAGTCATTAAGTCAGTTGTTCAAAGAGCCATATTCCGTGAACGGCGTATGGGAGCATCTTTACTGCGTTTGCACTTTCATGACTGCTTTGTCAATGGCTGTGATGGATCAGTTCTGCTGGATGACACCCCAAATTTCACAGGGGAGAAGACTGCACTCCCAAATATTGGCTCAATCAGAGGTTTGGAGGTTATTGATGAAATCAAAGCAGCGGTTGACAAAGCTTGCAAACGTCCTGTGGTATCATGTGCAGATATCTTAGCAGTTGCTGCTCGTGATTCTGTTTCCATTTTGGGAGGTTCACTCTATTGGTACAAAGTGCCATTAGGAAGAAGGGACGCAAGAACTGCAAGCAAGGATGCTGCAAACTCAAACCTTCCTCCCCCATTTTTCAGCTTCTCCCAGCTTCTTGCAAATTTCCAAGCTCATGGACTTGACCTTCAAGATCTCGTAGCTCTTTCTGGTGCACACACCATTGGATTTGCACAATGCTCTACCTTTAGGAACAGAATTTACAACGACACCAACATAGACCCAAACTTTGCATCTTCCTTGCAGAGCACGTGCCCTAAAAGTGGTGGAGATAGCAATCTTTCACCGTTGGATCGTTTCACTCCCTCGAGAGTTGACACTTCATACTATACTTCTTTGCTAAGTAAAAGGGGTCTTCTCCATTCTGATCAAGAGCTCTTCAAAGGAGATGGCAGTGAAAGTGACTCTTTGGTGAGGCTCTACAGTAGGAACCCTTTTGCTTTTGCAAGAGATTTCAAAGCTTCCATGATCAAGATGGGTAACATGAAGCCTCTTACTGGGAATGCTGGAGAGATCAGAGTCAACTGCAGAAAAGTCAACTAA 969 0.4499 MASHLQHFLVLAMAILLTIPSHAQQLSPDFYMACPQALPVIKSVVQRAIFRERRMGASLLRLHFHDCFVNGCDGSVLLDDTPNFTGEKTALPNIGSIRGLEVIDEIKAAVDKACKRPVVSCADILAVAARDSVSILGGSLYWYKVPLGRRDARTASKDAANSNLPPPFFSFSQLLANFQAHGLDLQDLVALSGAHTIGFAQCSTFRNRIYNDTNIDPNFASSLQSTCPKSGGDSNLSPLDRFTPSRVDTSYYTSLLSKRGLLHSDQELFKGDGSESDSLVRLYSRNPFAFARDFKASMIKMGNMKPLTGNAGEIRVNCRKVN 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3620g00004 322 Pfam Peroxidase 42 285 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium3620g00004 322 SUPERFAMILY Heme-dependent peroxidases 26 322 IPR010255 GO:0004601|GO:0006979|GO:0020037
Vium3620g00004 322 Gene3D - 30 319 - -
Vium3620g00004 322 Gene3D Peroxidase, domain 2 165 301 - -
Vium3620g00004 322 ProSiteProfiles Plant heme peroxidase family profile. 25 322 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium3620g00004 322 PANTHER PEROXIDASE 72-RELATED 23 321 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium3620g00004 322 ProSitePatterns Peroxidases proximal heme-ligand signature. 187 197 IPR019793 -
Vium3620g00004 322 ProSitePatterns Peroxidases active site signature. 56 67 IPR019794 GO:0004601
Vium3620g00004 322 CDD secretory_peroxidase 25 321 IPR033905 GO:0004601|GO:0042744
Vium3620g00004 322 FunFam Peroxidase 29 168 - -
Vium3620g00004 322 PRINTS Plant peroxidase signature 118 128 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium3620g00004 322 PRINTS Plant peroxidase signature 34 53 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium3620g00004 322 PRINTS Plant peroxidase signature 58 78 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium3620g00004 322 PRINTS Plant peroxidase signature 254 271 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium3620g00004 322 PRINTS Plant peroxidase signature 296 309 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium3620g00004 322 PRINTS Plant peroxidase signature 186 198 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium3620g00004 322 PRINTS Plant peroxidase signature 238 253 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium3620g00004 322 PRINTS Plant peroxidase signature 98 111 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium3620g00004 322 PRINTS Haem peroxidase superfamily signature 139 151 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium3620g00004 322 PRINTS Haem peroxidase superfamily signature 240 255 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium3620g00004 322 PRINTS Haem peroxidase superfamily signature 56 70 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium3620g00004 322 PRINTS Haem peroxidase superfamily signature 187 202 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium3620g00004 322 PRINTS Haem peroxidase superfamily signature 119 136 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium3620g00004 322 FunFam Peroxidase 165 301 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3620g00004 Vium-Chr3620 20450 22931 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3620g00004 25 322 Peroxidase AT5G05340 58.140 4.05e-120 347
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3620g00004 K00430 - gmx:100816580 577.785