Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3620g00003 ATGGACCGCGCATGGCTTTCTATATATATTAAGCTGGAGGAGCAGTGTCCATTCACAAAACCACAACTTCAAGTTAAACTTGAGCTAGCCATAATGGCTTTGAATTCACGTTGCAACGTGGTTTTCTTCTCTGTTTTGTTCTCTCTTCTTGCCATAGCTTCTTCTCAGCTTTCTTCAGATTTCTATGCAACATCATGCCCCACTGCTCTCTCCACCATCAAATCTGCAGTGAAAAGTGCTGTTTCCAAAGAGCGTCGCATGGGAGCATCCTTGCTCCGGCTCCATTTCCATGACTGCTTTGTTAATGGATGTGATGCATCTGTTCTTCTAGATGACACTTCGAGCTTCACGGGAGAGAAGTCAGCTGCTGCAAACGTGAATTCTCTGAGAGGTTTTGATGTAATCGACGACATCAAAAGTCAGTTGGAAAGTGCTTGTCCAGGAACTGTTTCCTGTGCAGATATTCTTGCTGTTGCTGCTCGTGATTCTGTTGTAGCATTGGGTGGTTCATCATGGACTGTTGGCTTAGGCAGAAGAGATTCAACCACTGCAAGTAAAGATGCTGCCACCACAGATATTCCATCCCCTCAATTGGATCTGAGTGATCTCATAACAGCTTTTTCAAATAAGGGGTTTACCACCAAAGAGATGGTAGTTCTCTCAGGAGCTCACACAACAGGGCAAGCGAAATGCCAGTTCTTCCGGGGTAGGATTTATAATGAAAGCAACATTGATTCAGATTTTGCAACATCAACACAGTCAAATTGCCCTAGCACTGATGGTGACAGCAACCTGTCCCCACTTGATGTGACCACCAATGTGTTATTTGACAATGCTTATTTCAAGAATCTGGTGAACAAGAAAGGGCTTCTGCATTCTGATCAGCAACTCTTCAGTGGTGGTTCCACCGATTCTCAGGTCACTACCTACAGCACAAGCTCTTCAACTTTCTATGCAGACTTTTCTAGTGCCATGGTCAAAATGGGAAACCTCAGTCCTTTAACAGGAACCAGTGGCCAAATCCGTACAAATTGCCGCCTGGTTAACTGA 1050 0.4457 MDRAWLSIYIKLEEQCPFTKPQLQVKLELAIMALNSRCNVVFFSVLFSLLAIASSQLSSDFYATSCPTALSTIKSAVKSAVSKERRMGASLLRLHFHDCFVNGCDASVLLDDTSSFTGEKSAAANVNSLRGFDVIDDIKSQLESACPGTVSCADILAVAARDSVVALGGSSWTVGLGRRDSTTASKDAATTDIPSPQLDLSDLITAFSNKGFTTKEMVVLSGAHTTGQAKCQFFRGRIYNESNIDSDFATSTQSNCPSTDGDSNLSPLDVTTNVLFDNAYFKNLVNKKGLLHSDQQLFSGGSTDSQVTTYSTSSSTFYADFSSAMVKMGNLSPLTGTSGQIRTNCRLVN 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3620g00003 349 FunFam Peroxidase 60 200 - -
Vium3620g00003 349 Gene3D Peroxidase, domain 2 194 328 - -
Vium3620g00003 349 Pfam Peroxidase 74 312 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium3620g00003 349 FunFam Peroxidase 194 328 - -
Vium3620g00003 349 Gene3D - 60 346 - -
Vium3620g00003 349 PANTHER PEROXIDASE 72-RELATED 49 347 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium3620g00003 349 PRINTS Haem peroxidase superfamily signature 168 180 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium3620g00003 349 PRINTS Haem peroxidase superfamily signature 216 231 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium3620g00003 349 PRINTS Haem peroxidase superfamily signature 269 284 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium3620g00003 349 PRINTS Haem peroxidase superfamily signature 88 102 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium3620g00003 349 PRINTS Haem peroxidase superfamily signature 150 167 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium3620g00003 349 CDD secretory_peroxidase 56 348 IPR033905 GO:0004601|GO:0042744
Vium3620g00003 349 ProSitePatterns Peroxidases active site signature. 88 99 IPR019794 GO:0004601
Vium3620g00003 349 PRINTS Plant peroxidase signature 215 227 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium3620g00003 349 PRINTS Plant peroxidase signature 90 110 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium3620g00003 349 PRINTS Plant peroxidase signature 323 336 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium3620g00003 349 PRINTS Plant peroxidase signature 130 143 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium3620g00003 349 PRINTS Plant peroxidase signature 149 159 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium3620g00003 349 PRINTS Plant peroxidase signature 66 85 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium3620g00003 349 PRINTS Plant peroxidase signature 168 183 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium3620g00003 349 PRINTS Plant peroxidase signature 283 300 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium3620g00003 349 PRINTS Plant peroxidase signature 267 282 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium3620g00003 349 SUPERFAMILY Heme-dependent peroxidases 56 349 IPR010255 GO:0004601|GO:0006979|GO:0020037
Vium3620g00003 349 ProSiteProfiles Plant heme peroxidase family profile. 56 349 IPR002016 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3620g00003 Vium-Chr3620 16799 18948 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3620g00003 52 349 Peroxidase AT5G05340 63.667 1.66e-141 402
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3620g00003 K00430 - gmx:100818176 522.702