Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3617g00006 ATGCAGAAACCATCTACCGACGCAATTAGTATGGGAAAAAGGAGCCTGGAGGGTGGAGAAGATGATCAGCCTGAACGAAAGAGGCCTGCTCTCGCCAGTGTAATTGTTGAAGCTCTTAAGGTGGACAGTTTGCAGAAGCTTTGCTCATCTTTAGAGCCTATTCTACGTAGAGTTGTGAGTGAAGAGGTGGAGCGTGCTTTGGCAAAGTTAGGTCCTGCAAGAATTTGTGGAAGGTCTCCACCTAAAATGATTGAAGGCCCTGAAGGTAGAAACTTGCAGCTGCAATTTAAGTCCCGGCTGTCTCTTCCCCTCTTCACAGGAGGAAAAGTAGAAGGCGAGCGGGGGGCTCCAATACATGTTGTTCTGATTGATGCCAACAGTGGAAGCGTTGTAACATCTGGACCTGAATCCTCTGTTAAGCTTGATGTTGTTGTCCTTGAAGGTGATTTTAACAATGAAGATGATGAAGATTGGACCCAAGAGCATTTTGAAAGCCATGTGGTAAAAGAACGTGAAGGAAAGAGACCTTTATTAACTGGGGACCTGCAAGTAACACTCAAGGAAGGAGTTGGAACATTAGGGGAACTGACCTTTACTGATAATTCAAGCTGGATACGGAGCCGCAAATTCCGGCTTGGCCTGAAGGTTGCCTCAGGCTTTTGTGAGTCCGTACGCATTCGTGAAGCTAAGACAGTGGCTTTTAATGTTAAAGATCATAGAGGAGAATTATATAAGAAGCACTACCCTCCTGCATTGACGGATGAAGTGTGGAGATTGGAGAAGATAGGCAAGGATGGATCATTTCACAAGAAGCTGAATAATGCAGGAATAGTCACAGTTGAAGACTTTCTTCGGCTCGTGGTTAAAGATCAACAGAAATTGCGGAATATCCTTGGAAGTGGTATGTCGAACAAGATGTGGGAGGCACTTTTAGAGCATGCAAAAACATGTGTTCTAAGTGGGAAGCTCCATGTTTATTATCCAGAAGATGCAAGAAATGTTGGTGTTATTTTTAACAATATCTATGAGCTGCGTGGCCTTATATCAGGAGAACAATTCTTTTCTGCGGATTCTCTCACTGATACCCAGAAGGTTTATGTAGATTCGTTGGTGAAGAAAGCATACGAAAATTGGGAACAGGTTGTAGATTATGATGGCAAATCACTTGTTAATGGCAACCAAAATACCAGTTCTATTGCATCTGAAAATGAACTTCGTGTTGAGTCAATTGATTATGGTTCTGGTTTAGATCATCAGCTGCAACTGCCGGGACTTCCAGTGTCCGTTCCTTCTGAACATCAAATGAATTCTGGGATGTCAGTTGGGGGTTATAACGATAATGAGGTAACACGATATCCAACCCAGTCATTGATTTCAAACTCAAGCTCCCGGAGTCAGTTCGATAGCTCATTATATCTGTCTAATGACCAATTAATTACCAATACTCACCACACCCCAAACACTAGAAACGATCATGGGACAGTTGGGTTAGCTCTAGGACCTCCTCAATCATCGACGTCAGGGTTTCATGCTGGTAGCTCTTCTATTCAGCCATCTACTCTAAACCCTTTTGATGATTGGTCACACAACAGGGACAAGGGGGTTGATGAATTCTTTTCAGAAGAAGAAATCCGCCTCAGAAGTCACGAAATGTTAGAGAATGAAGATATGCAGCACTTGCTTCGGCTCTTCAGCATGGGAGGCCATGGGTCCATGAGTGCGGAGGATGGCTTTTCATTCCCAACATATATGCCATCTCCCAATATACCAAACTATGATGAGGACCGTTCTCGCCCAGGCAGAGCTGTTGTGGGATGGTTGAAGATCAAGGCAGCAATGAGGTGGGGGTTCTTTATCAGGAAGATAGCAGCTGAGAAACGGGCACAGATAGAGGAGTTAGATGAATAG 1908 0.4408 MQKPSTDAISMGKRSLEGGEDDQPERKRPALASVIVEALKVDSLQKLCSSLEPILRRVVSEEVERALAKLGPARICGRSPPKMIEGPEGRNLQLQFKSRLSLPLFTGGKVEGERGAPIHVVLIDANSGSVVTSGPESSVKLDVVVLEGDFNNEDDEDWTQEHFESHVVKEREGKRPLLTGDLQVTLKEGVGTLGELTFTDNSSWIRSRKFRLGLKVASGFCESVRIREAKTVAFNVKDHRGELYKKHYPPALTDEVWRLEKIGKDGSFHKKLNNAGIVTVEDFLRLVVKDQQKLRNILGSGMSNKMWEALLEHAKTCVLSGKLHVYYPEDARNVGVIFNNIYELRGLISGEQFFSADSLTDTQKVYVDSLVKKAYENWEQVVDYDGKSLVNGNQNTSSIASENELRVESIDYGSGLDHQLQLPGLPVSVPSEHQMNSGMSVGGYNDNEVTRYPTQSLISNSSSRSQFDSSLYLSNDQLITNTHHTPNTRNDHGTVGLALGPPQSSTSGFHAGSSSIQPSTLNPFDDWSHNRDKGVDEFFSEEEIRLRSHEMLENEDMQHLLRLFSMGGHGSMSAEDGFSFPTYMPSPNIPNYDEDRSRPGRAVVGWLKIKAAMRWGFFIRKIAAEKRAQIEELDE 635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3617g00006 635 Coils Coil 623 635 - -
Vium3617g00006 635 Pfam Calmodulin binding protein central domain 252 317 IPR046830 -
Vium3617g00006 635 PANTHER OS02G0177800 PROTEIN 11 557 IPR012416 GO:0005516
Vium3617g00006 635 Pfam Calmodulin binding protein C-terminal domain 322 384 IPR046829 -
Vium3617g00006 635 MobiDBLite consensus disorder prediction 1 27 - -
Vium3617g00006 635 Pfam Calmodulin binding protein-like N-terminal domain 92 239 IPR046831 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3617g00006 Vium-Chr3617 13060 19993 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3617g00006 1 630 Calmodulin-binding Proteins AT5G57580 67.031 0.0 847
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3617g00006 - - gmx:100790087 1139.41