Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3616g00005 ATGTCACCAACCATTACTCATGTGTTATTACCTCTTATTCTTGGGATTGTGTTGGCTGAACCAACTCAAGCAATCAAACAGTCGTATATTGTATACTTAGGATCACATTCTTTTGGTCCAAATCCTTCTTTGGTTGATCTTGAATCTGTCACAGACTCTCACCATGATTTCCTTGGATCTTACCTGGGAAGCATCGAAAAGGCCAAGGAAGCAATCTTTTATTCTTATAATAGATATATCAATGGGTTTGCTGCAGTACTTGAGGAAGATGAAGCAGCAAATATTGCAAAGCATCCCAGTGTCGTATCAGTTTTCTTAAACAAAAAACGAAAGTTACACACAACGCATTCATGGAATTTTCTTGGGTTAGAGAGAAATGGTGGATATCCTGAGACCTCAGCATGGCGAAAGACATTGGGTGAAGATGTGATCATTGGAAACCTTGACACAGGTGTTTGGCCCGAATCCAAGAGCTTTAGTGATGAAGGGTTAGGACCCATCCCAAAACGGTGGCGTGGAATATGTCAAACGCATAAAAAAGCTAAAGATAAATTTCAATGCAACAGGAAGCTTATTGGAGCAAGATATTTTTACAAAGGCTATGAGGCAAATTTTCAGATAAAACTGAATGAGTCATTGCTTAGTGCACGTGACAATGAAGGCCATGGTTCACATACTTTGTCAACAGCTGGTGGTAGCTTTGTTCCTGGAGCTAGTGTTTTTGGCATTGGAAATGGAACAGCAAGTGGTGGATCACCAAAAGCTCGAGTTGCGGCATATAAGGTGTGCTGGCCAAATCCTATCCCGTTCGGTGGTGGATGTTTTGATGCAGACATTATGGCTGCTTTTGAGGCAGCCATAAGTGACGGGGTTGATGTGCTTTCAATGTCTTTGGGATCGGAGGCCCATGATTATTTCGAAGACGGTATTGCCATAGGATCCTTCCATGCAGTTGCCAATGGCATAGTAGTAGTGGCTTCTGCAGGAAATTCAGGACCTCTTCCTGAATCTGTATCCAACATTGGACCATGGATGCTCACAGTCGCTGCAAGCACAATTGATAGAGACTTCGCTAGTTATGTTACACTTGGTGACAAGAAAATCATCAAGGGAGGTAGCCTTTCAGAGTATGGATTATCATCTGATAAGGCGTACCCATTGATTAGTTCTGCTGATGCCAAATATTTCAATGGTTCTATTTCGGAAGCACTCAATTGCCAGGATGGAAGTCTTGATCCTGAGAAGGTGAAGGGGAAAATATTGGTCTGTTTTGGTGATATATTAGAGAGTAATGGGGAAGCTATTAGGGTAGGCGCCGTTGGATTGCTTTTGCTTAATGAAAGGAATGCAGGGAATGAAGTTTTACCCCAACCCTACTTGCTTCCTGCTGCTAATGTTGGCTTTGAGGATGGCAATTACATTTACAATTACATCCGCAGCACCAAGTCTCCTACAGCTTATATTTCCAGAGTGATAACAGAATTGGGTGTGAAGCCAGCTCCAAATGTGGCTTTATTTTCATCTAGGGGCCCCAATCCTATTGATCCGGCAATCCTCAAGCCTGATATCACTGCACCAGGATTCAACATCATAGCTGCTTATACTGAAGCCGTATCTGCTACAGGTCTAGAATCTGACACACGAATAACTCCTTTCTTTTCCATGACTGGCACTTCAATGTCATGTCCTCATGTTGCTGGCCTAGCTGGGCTGCTCAAAGCCCTTCATCCTGATTGGAGCCCAGCTGCTATAAAGTCAGCAATCATGACCTCAGCCACTTCAACAGATAACTCTAGAAAGCCTATCCAGGACTCGTCATTGAACGAGGCAACTCCATTTGACTATGGTGCAGGGCATATTAAACCTAACAGTGCTGTGGACCCTGGACTTGTGTATGACCTGAATATTACTGATTTTTTGAACTATTTGTGTGGTCGTGGCTACAACAGTTCCCAGCTTAAGATGTTCAACCACAAGCCTTACACTTGTCCAGAGTCGGTCAGTTTAGCAGATTTCAATTATCCAGCAATCACAATTTCTGAGTTTGGCCCTGGAAATTCTGTGAATGTCTCTCGAACTGTCACTAATGTTGGGTCCGGAAGAAGCACTTATATGGTACGCATAAAAGCGCCACCACATGTTGAAGTTTCGGTGGAGCCTAGGAAACTGAGGTTCAAGAAAAAGGGTGAAAAGAAGGAGTTCAGAGTGGCATTGACCTTGAAGAAAACTGAAAGCACCACTGATTTCGGATTCGGATGGTTGACGTGGACCGATAAGAAACACCATGTTAGGAGTCCCATTGCAGTTAACATGACACAAGTGAGATGA 2328 0.4326 MSPTITHVLLPLILGIVLAEPTQAIKQSYIVYLGSHSFGPNPSLVDLESVTDSHHDFLGSYLGSIEKAKEAIFYSYNRYINGFAAVLEEDEAANIAKHPSVVSVFLNKKRKLHTTHSWNFLGLERNGGYPETSAWRKTLGEDVIIGNLDTGVWPESKSFSDEGLGPIPKRWRGICQTHKKAKDKFQCNRKLIGARYFYKGYEANFQIKLNESLLSARDNEGHGSHTLSTAGGSFVPGASVFGIGNGTASGGSPKARVAAYKVCWPNPIPFGGGCFDADIMAAFEAAISDGVDVLSMSLGSEAHDYFEDGIAIGSFHAVANGIVVVASAGNSGPLPESVSNIGPWMLTVAASTIDRDFASYVTLGDKKIIKGGSLSEYGLSSDKAYPLISSADAKYFNGSISEALNCQDGSLDPEKVKGKILVCFGDILESNGEAIRVGAVGLLLLNERNAGNEVLPQPYLLPAANVGFEDGNYIYNYIRSTKSPTAYISRVITELGVKPAPNVALFSSRGPNPIDPAILKPDITAPGFNIIAAYTEAVSATGLESDTRITPFFSMTGTSMSCPHVAGLAGLLKALHPDWSPAAIKSAIMTSATSTDNSRKPIQDSSLNEATPFDYGAGHIKPNSAVDPGLVYDLNITDFLNYLCGRGYNSSQLKMFNHKPYTCPESVSLADFNYPAITISEFGPGNSVNVSRTVTNVGSGRSTYMVRIKAPPHVEVSVEPRKLRFKKKGEKKEFRVALTLKKTESTTDFGFGWLTWTDKKHHVRSPIAVNMTQVR 775
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3616g00005 775 Gene3D Peptidase S8/S53 domain 142 639 IPR036852 GO:0004252|GO:0006508
Vium3616g00005 775 Gene3D - 643 772 - -
Vium3616g00005 775 Gene3D - 354 495 - -
Vium3616g00005 775 Pfam Fibronectin type-III domain 671 769 IPR041469 -
Vium3616g00005 775 Pfam Subtilase family 140 600 IPR000209 GO:0006508|GO:0008236
Vium3616g00005 775 FunFam Subtilisin-like protease SBT1.5 142 365 - -
Vium3616g00005 775 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 17 113 IPR037045 -
Vium3616g00005 775 FunFam Subtilisin-like protease SBT1.5 643 772 - -
Vium3616g00005 775 CDD PA_subtilisin_like 360 488 - -
Vium3616g00005 775 SUPERFAMILY Subtilisin-like 112 630 IPR036852 GO:0004252|GO:0006508
Vium3616g00005 775 ProSitePatterns Serine proteases, subtilase family, serine active site. 557 567 IPR023828 -
Vium3616g00005 775 ProSiteProfiles Serine proteases, subtilase domain profile. 117 626 - -
Vium3616g00005 775 CDD Peptidases_S8_3 111 593 IPR034197 -
Vium3616g00005 775 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 29 769 IPR045051 -
Vium3616g00005 775 FunFam Subtilisin-like protease SBT5.3 17 113 - -
Vium3616g00005 775 FunFam subtilisin-like protease SBT1.5 354 495 - -
Vium3616g00005 775 Pfam Peptidase inhibitor I9 28 113 IPR010259 -
Vium3616g00005 775 PRINTS Subtilisin serine protease family (S8) signature 140 159 IPR015500 -
Vium3616g00005 775 PRINTS Subtilisin serine protease family (S8) signature 556 572 IPR015500 -
Vium3616g00005 775 PRINTS Subtilisin serine protease family (S8) signature 218 231 IPR015500 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3616g00005 Vium-Chr3616 40784 46376 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3616g00005 21 772 Subtilisin-like Serine Gene Family AT5G59810 57.256 0.0 835
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3616g00005 - - vun:114175516 1376.3