Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3616g00003 ATGGCACGATCCATTTCTCATGTCTTATTTTCACTTGTTCTTTGCATTCTGCTGCAAGATCATATCCAAGCACTCAGACAGTCGTATATTGTATACTTAGGATCACATTCTTTTGGTCCAAATCCTTCTTTGGTTGATCTTGAATCTGTCACAGACTCTCACCATGATTTCCTTGGATCTTACCTGGGAAGCATCGAAAAGGCCAAGGAAGCAATCTTTTATTCTTATAATAGATATATCAATGGGTTTGCTGCAGTACTTGAGGAAGATGAAGCAGCAAATATTGCAAAGCATCCCAGTGTCATATCAGTTTTCTTAAACAAAAGGCATAAATTGCACACAACACACTCCTGGAACTTCCTTGGGTTAGAAAGAAATGGTGCGTTTCCACCTCAGTCAGTATGGCGGAAGACTAAGGGTGAAGATGTCATTATTGGAAATATCGATACAGGTGTTTGGCCTGAATCCAAGAGTTTTGGTGATGAAGGGTTTGGACCCATCCCAAAAAGATGGCGTGGAATCTGTCAAACGGAGGATAATTTTAAATGCAACAGGAAGCTTATTGGAGCAAGATACTTCTACAAAGGCTATGAGGCATTTATTGGTAAAAAACTGAATACGTCGATAGTTAGTGCACGCGACCACGATGGTCATGGTTCACATACTTTATCAACAGCTGGTGGTAACGCTGTTCCTGGAGCTAATGTTTTTGGGTTTGGCAATGGAACTGCAAGTGGTGGATCACCAAAAGCTCGAGTTGCAGCCTACAAGTCGTGCTGGCCTCCGGGATGTTCTGATGCAGATATTCTTGCTGCTTTTGAGGCTGCCATAAGTGATGGTGTGGATGTGATTACCATGTCTGTGGGTTCAGATAGTCCACCTGAGTTTTATCAAAGTGGTATATCTATAGGGTCCTTCCATGCAGTTTCCCACGGCATAACATTGGTGGCTTCTGGAGGAAATTCAGGACCTATTCTTGGATCTGTGTCCAACATTGAACCGTGGACTCTCACTGTTGGAGCAAGCACAATCGACAGAGACTTCGTTAGTAATGTTATACTTGGTAACGGGAAAATCTTCAAGGTATGCTGTTTACACATACAACCTTGTTTTTGTCTTGTTCTTTTTCGTTTTCAAGGCAGCATTGAAAACCCAAATCATGAGCCACTGACCTACCCTCCTTTTTGTTTTGTTATTGCTAGGGAGCTAGCCTTTCAAGTCCATTCTTGCAGCTTTTTTTGCACGAATGAGACTCTTGATGCTAGGAAGGTGAAGGGAAAGATATTGGTGTGTCTTCGCGGCGTAAATGGTAGAGTAGAGAAGGGTGTTGTAGCTGCTAGTTTAGGAGCTGTTGGAATGATTCTGGCTAATAATGCGGGCGAAGGTGATGAAATTATATCCGATCCCCATGTGCTTCCTGCTACACATGTTGGCTTTGAGACTGGCAAATACATTTATAGTTACATCAACCGTACCAAGTTTCCCGTAGCTTCTATTTCTAGAGTGAGAACAAAACTGGGTACGAAGCCAGCTCCAGTTATGGCTGCATTTTCATCAAGGGGTCCCAATCTCCTCGACCCAGCAATCCTCAAGCCTGATATCACTGCACCAGGAATCAACATCATTGCTGCTTATACTGAAGGCCAAGATCCCACAAAACCTGACCAAATAATAACTCCTTACATTGCATTGTCTGGCACCTCAATGTCGTGTCCTCATGTTGCTGGTGTTGTTGGGTTGCTCAAAGCCCTCCATCCTAATTGGAGCCCAGCTGCTATTAAGTCAGCAATCATTACCTCAGCAACTACAAAAGATAACTCTAGAAGGGTTATCCGAGCTTCATCATTGGAGAAGACAACACCATATGACTTGGGTGCAGGCCACATTCGACCTAATCGTGCTGCATACCCCGGACTTATATATGACCTAAATACTACTGATTATTTAAACTATTTGTGTGGTCGTGGCTACGACAGTTCCCAGATTATGTTGTTCTACGGCAAGCCTTTCACTTGTCCGAAGTCCTTCAGTTTAGCAGATTTCAATTACCCAACAATCACGATTCCTCGGATTGAGTATGGACAATCTGTGAAAGTTTCTCGAACAGTTACAAATGTTGGGTCCCCAAGCGTGTATAGAGTTCGCATTGAGGCGCCACCAAACGTTGCAGTTTCTGTTGATCCTGCGGAACTAAAGTTCAAGGAAAAGGGTGAGAAAAAAGAGTTTCGAGTTTCATTGACCTTGAAGTCCAAAACTGAGAACACCACTGATTTCGTATATGGGTCGTTGACATGGACTAATCACAAGAACCGCGTTAGGAGTCCAATTGTAGTTGTCTTGAATAGTTTCTGA 2352 0.4307 MARSISHVLFSLVLCILLQDHIQALRQSYIVYLGSHSFGPNPSLVDLESVTDSHHDFLGSYLGSIEKAKEAIFYSYNRYINGFAAVLEEDEAANIAKHPSVISVFLNKRHKLHTTHSWNFLGLERNGAFPPQSVWRKTKGEDVIIGNIDTGVWPESKSFGDEGFGPIPKRWRGICQTEDNFKCNRKLIGARYFYKGYEAFIGKKLNTSIVSARDHDGHGSHTLSTAGGNAVPGANVFGFGNGTASGGSPKARVAAYKSCWPPGCSDADILAAFEAAISDGVDVITMSVGSDSPPEFYQSGISIGSFHAVSHGITLVASGGNSGPILGSVSNIEPWTLTVGASTIDRDFVSNVILGNGKIFKVCCLHIQPCFCLVLFRFQGSIENPNHEPLTYPPFCFVIARELAFQVHSCSFFCTNETLDARKVKGKILVCLRGVNGRVEKGVVAASLGAVGMILANNAGEGDEIISDPHVLPATHVGFETGKYIYSYINRTKFPVASISRVRTKLGTKPAPVMAAFSSRGPNLLDPAILKPDITAPGINIIAAYTEGQDPTKPDQIITPYIALSGTSMSCPHVAGVVGLLKALHPNWSPAAIKSAIITSATTKDNSRRVIRASSLEKTTPYDLGAGHIRPNRAAYPGLIYDLNTTDYLNYLCGRGYDSSQIMLFYGKPFTCPKSFSLADFNYPTITIPRIEYGQSVKVSRTVTNVGSPSVYRVRIEAPPNVAVSVDPAELKFKEKGEKKEFRVSLTLKSKTENTTDFVYGSLTWTNHKNRVRSPIVVVLNSF 783
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3616g00003 783 FunFam Subtilisin-like protease SBT5.3 18 113 - -
Vium3616g00003 783 Pfam Subtilase family 140 606 IPR000209 GO:0006508|GO:0008236
Vium3616g00003 783 ProSitePatterns Serine proteases, subtilase family, serine active site. 566 576 IPR023828 -
Vium3616g00003 783 CDD Peptidases_S8_3 110 602 IPR034197 -
Vium3616g00003 783 CDD PA_subtilisin_like 413 499 - -
Vium3616g00003 783 PRINTS Subtilisin serine protease family (S8) signature 140 159 IPR015500 -
Vium3616g00003 783 PRINTS Subtilisin serine protease family (S8) signature 214 227 IPR015500 -
Vium3616g00003 783 PRINTS Subtilisin serine protease family (S8) signature 565 581 IPR015500 -
Vium3616g00003 783 SUPERFAMILY PA domain 422 495 IPR046450 -
Vium3616g00003 783 Gene3D - 652 780 - -
Vium3616g00003 783 SUPERFAMILY Subtilisin-like 112 638 IPR036852 GO:0004252|GO:0006508
Vium3616g00003 783 Gene3D Peptidase S8/S53 domain 142 648 IPR036852 GO:0004252|GO:0006508
Vium3616g00003 783 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 29 778 IPR045051 -
Vium3616g00003 783 ProSiteProfiles Serine proteases, subtilase domain profile. 117 635 - -
Vium3616g00003 783 Pfam PA domain 415 484 IPR003137 -
Vium3616g00003 783 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 17 113 IPR037045 -
Vium3616g00003 783 FunFam Subtilisin-like protease SBT1.5 652 781 - -
Vium3616g00003 783 FunFam Subtilisin-like protease SBT1.5 142 355 - -
Vium3616g00003 783 Gene3D - 345 506 - -
Vium3616g00003 783 Pfam Fibronectin type-III domain 680 778 IPR041469 -
Vium3616g00003 783 Pfam Peptidase inhibitor I9 28 113 IPR010259 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3616g00003 Vium-Chr3616 22551 26196 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3616g00003 24 782 Subtilisin-like Serine Gene Family AT5G59810 54.498 0.0 796
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3616g00003 - - vun:114175516 999.579