Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3615g00012 ATGAGTGTGGTGGGGTTTGACATTGGTAATGAGAACTGTGTCATTGCTGTAGTCAGGCAACGTGGGATTGATGTGTTGTTGAATTATGAATCCAAACGCGAAACCCCAGCTGTGGTCTGCTTCAGCGAGAAGCAGCGGCTTTTGGGGTCTGCTGGTGCTGCTTCGGCTATGATGCACATCAAGTCCACTGTATCTCAAATAAAGAGACTAATAGGAAGGAAATTTGCAGATCCTGATGTGGATAAAGAGCTGAAAATGCTCCCTCTTGAAACTTCTGAGGGTCCAGATGGAGGCATTTTGATTCACTTGAAGTACTTGGGGGAGATTCATGTATTTACACCTGTTCAAATAATGTCAATGCTCTTTGCTCACTTGAAGGCTATGACTGAAACAGATTTGGAGATGCCCATTTCGGATTGTGTTATTGGGATCCCATCATACTTTACAGACTTGCAGAGGCGGGCATATCTTGATGCTGCAAAAATTGCAGGGTTGAAGCCTCTGAGGTTGATCCACGATTGTACTGCAACTGCCCTTAGTTATGGAATGTATAAAACAGATTTTAGTGGTACAGGTCCGGTTTATGTTGCATTTATTGACGTTGGTCATTGTGACACTCAGGTCTCCATTGCATCATTTGAGTTTGGGAAAATGAAGATACTTTCACAGGCATTTGACAGGAGCTTAGGAGGCAGGGACTTTGATGAGGTTCTTTTTAGTCATTTTGCAGCAAAATTCAAAGAAGAGTACCATATTGATGTGTATTCTAATACCAAGGCGTGCTTTAGGCTACGTGCAGCATGTGAGAAATTGAAGAAAGTTTTGAGTGCAAATCTAGAGGCACCTCTAAATATCGAGTGCTTGATGGATGAGAAGGATGTGAAGGGCTTTATCTCAAGGGAAGAATTTGAGAAGCTCGCGTCAGGATTATTAGAGAGAGTTTCTATTCCTTGCCTCAGAGCATTAACTGATGCAAACTTGACAGTGGAGAAGATTTCTTCTGTAGAGCTAGTTGGTTCGGGATCTAGGATTCCAGCTATAAGTACATTACTAATTTCCTTATTCAAGAGAGAACCCAGTCGACAGCTGAATGCAAGTGAGTGTGTAGCTCGTGGTTGTGCTCTACAGTGTGCAATGCTCAGTCCTGTTTACCGTGTGAGAGAATACGAGGTTCAGGATGTTATTTCCTTTTCAATTGGACTTTCATCAGATGAAGGTCCAGTTGCTGTGAGGTCAAATGGTGTACTTTTCCCAAGAGGCCAACAATTTCCAAGTGTTAAAGTCATAGCCTTTCAGCGAAGTAATTTGTTTCATCTGGAAGCTTTCTATGTTAATCCAGATGAACTACCACCTGGGACATCTCCTAAAATTAGTTGTGTCACGATTGGCCCTTTCCATGGATCCCATGGTAGTAAGAGCAGAGTTAAAGTTAGAGTTTCACTTGATCTGCATGGAATTCTCAATATTGAATCAGCTACATTGATTAAGGATGGCACGGATGATTTGGTTATGGAGGGTAATCATAATTCAAATTCTGATGCAATGGATATTGATCCCATTCCTTACACAGTTGCCAATGGGTTTGAAGATATCACCAATAAGAAGTTGGAATCTCCATGTAGTTCTGATGGTGGTATAAGAAAAGATAAGGGTAACAGAAGGGTTGATGTGCCAGTGAATGAGAATATCTATGGTGGAATGACAAAGGCAGAAATCACAGAAGCTCGTGAAAAAGAACTCCAGTTGGCCCAACAGGACAGAATTATAGAGCAAACCAAAGAAAAGAAGAATAGCTTGGAGTCCTATGTCTATGATATGAGGAGTAAGCTCTTCCACAAATATAGAAGCTTTGCAAGTGAACAAGAGAGGGATGACATATCTAGGAGTCTTCAAGAGACCGAGGAATGGCTTTATGAGGATGGTGTTGATGAAACTGAGCATGCTTATTCTTCAAAACTAGAAGATCTGAAAAAGCTGGTAGATCCAATTGAGAATCGGTTCAAAGATGAAAAAGAAAGAGTGCAAGCTAAAGGGGATTTATTGAAGTGCATTTCAAAGCATCTCACATCTGCAGATTCCCTTCCACCCCAGGATAAAGAACTGATCATCAACGAGTGCAATAAAGCAGAGCAGTGGTTGAAAGAGAAGATCCAGCAACAAGAATCATCTTCTAAGAATACTGACCCAATAGTATGGTCAAGTGAGATTAAGAGCAAGACAGAAGAATTTAACTTAACATGCCAACACATATTGGGATCCAAGGCTTCTCCACCTCCAGAAGACAAAGACATGCCAGATTCTTCCAATGATCCATGA 2316 0.4136 MSVVGFDIGNENCVIAVVRQRGIDVLLNYESKRETPAVVCFSEKQRLLGSAGAASAMMHIKSTVSQIKRLIGRKFADPDVDKELKMLPLETSEGPDGGILIHLKYLGEIHVFTPVQIMSMLFAHLKAMTETDLEMPISDCVIGIPSYFTDLQRRAYLDAAKIAGLKPLRLIHDCTATALSYGMYKTDFSGTGPVYVAFIDVGHCDTQVSIASFEFGKMKILSQAFDRSLGGRDFDEVLFSHFAAKFKEEYHIDVYSNTKACFRLRAACEKLKKVLSANLEAPLNIECLMDEKDVKGFISREEFEKLASGLLERVSIPCLRALTDANLTVEKISSVELVGSGSRIPAISTLLISLFKREPSRQLNASECVARGCALQCAMLSPVYRVREYEVQDVISFSIGLSSDEGPVAVRSNGVLFPRGQQFPSVKVIAFQRSNLFHLEAFYVNPDELPPGTSPKISCVTIGPFHGSHGSKSRVKVRVSLDLHGILNIESATLIKDGTDDLVMEGNHNSNSDAMDIDPIPYTVANGFEDITNKKLESPCSSDGGIRKDKGNRRVDVPVNENIYGGMTKAEITEAREKELQLAQQDRIIEQTKEKKNSLESYVYDMRSKLFHKYRSFASEQERDDISRSLQETEEWLYEDGVDETEHAYSSKLEDLKKLVDPIENRFKDEKERVQAKGDLLKCISKHLTSADSLPPQDKELIINECNKAEQWLKEKIQQQESSSKNTDPIVWSSEIKSKTEEFNLTCQHILGSKASPPPEDKDMPDSSNDP 771
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3615g00012 771 FunFam Heat shock 70 kDa protein 4 1 81 - -
Vium3615g00012 771 FunFam Heat shock 70 kDa protein 16 isoform A 387 565 - -
Vium3615g00012 771 Pfam Hsp70 protein 3 666 IPR013126 GO:0005524|GO:0140662
Vium3615g00012 771 Gene3D Actin; Chain A, domain 4 230 313 - -
Vium3615g00012 771 PANTHER HSC70CB, ISOFORM G-RELATED 1 759 - -
Vium3615g00012 771 FunFam Heat shock 70 kDa protein 4 114 192 - -
Vium3615g00012 771 FunFam Heat shock 70 kDa protein 4 38 113 - -
Vium3615g00012 771 FunFam Heat shock 70 kDa protein 4 230 313 - -
Vium3615g00012 771 SUPERFAMILY Actin-like ATPase domain 192 381 IPR043129 -
Vium3615g00012 771 Gene3D - 186 360 - -
Vium3615g00012 771 MobiDBLite consensus disorder prediction 750 771 - -
Vium3615g00012 771 PRINTS 70kDa heat shock protein signature 2 15 - -
Vium3615g00012 771 PRINTS 70kDa heat shock protein signature 388 407 - -
Vium3615g00012 771 PRINTS 70kDa heat shock protein signature 332 348 - -
Vium3615g00012 771 PRINTS 70kDa heat shock protein signature 30 42 - -
Vium3615g00012 771 PRINTS 70kDa heat shock protein signature 472 488 - -
Vium3615g00012 771 PRINTS 70kDa heat shock protein signature 140 160 - -
Vium3615g00012 771 PRINTS 70kDa heat shock protein signature 363 383 - -
Vium3615g00012 771 Gene3D - 38 113 - -
Vium3615g00012 771 Gene3D - 5 374 - -
Vium3615g00012 771 CDD HSPA4_like_NDB 2 381 - -
Vium3615g00012 771 Gene3D - 567 677 IPR029048 -
Vium3615g00012 771 FunFam Heat shock 70 kDa protein 4 567 677 - -
Vium3615g00012 771 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 569 666 IPR029048 -
Vium3615g00012 771 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 384 600 IPR029047 -
Vium3615g00012 771 SUPERFAMILY Actin-like ATPase domain 1 185 IPR043129 -
Vium3615g00012 771 Coils Coil 575 595 - -
Vium3615g00012 771 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 385 516 IPR029047 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3615g00012 Vium-Chr3615 137390 143665 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3615g00012 4 663 Calmodulin-binding Proteins AT1G16030 28.979 4.80e-80 268
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3615g00012 K09489 - gmx:100783952 1357.43