Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3615g00011 ATGGTAAAGCAGCTTCTACTTGTTGTGTTCCTCACTGCTGCAGCAGCAGCCGCTAAAGCCCATCCAGTGACAAAGCCAAACTGCCCAACAAAGTGTGGGAATGTTAGCATTCCCTTTCCCTTCGGCCTGACTAAGCTATGTTCTCTCAACACCTCATTTCTCATCACTTGCAACAAAAGCCTTTCACCACCTATTCCATTCTTGAATACTACTAATAATGAAAAGGTGCGGGTGCTGGACATCTCACTCGACGGCCAACTTCACGTTTCATTGCCAGTTGCCACAAGTTGTGTCAATAACAAGAATGGTGAATCAGACAAGGATTTCTTTTTCTTCAGGTTATACACACCTTTTCACCTGTCATCTCGGCAAAACAAGTTAACTGTATTGGGCGCTTACACGGCAGGAGTAGTATATGATGACTATTTTAGATTCTGGAGAACATACCCTCCCACTTATTGCGTGTCCTTCTACAGCAGCGACCTTTACAACAAGACACATGACGAGTCATGCTCCGGCACTTTCTGTTGCGAGACTCCAATTCAACATAGGCTATCGGAATTATACTATGCTTGTGCTGCAAATATCTTCGACTATAACTCAACCAGAAGGGAATTTCTGTCCTACCCATGTGGTTATACATTTCTGGCTAAGGAGGGAGCCTACAATTTCTCCATGTCAGATTTCATCAATTTTAACACAAGCAACACGTTTCCCGTGGTTGTGGATTGGGCAGTGGGGAACAGGTGCCCAGCTGCAAAGAAGAATGCTTCAAGCTATGCGTGTAAGTCAAAGGACAGTGAATGTCACAATGCAAAGCTGGGACCTGGTTACCATTGTAACTGCTCCACTGGTTTTCGAGGAAATCCTTACCTACTAGATGGTTGTCAAGGTCTCTATATTCTCCTCCTTTTAATCATTTTTAATAAACTCGTTAATTATCTTTTAGATATTGATGAATGCACTGAGGAATCCCACAACTGTTTAAAGGGGAAATCAAAATGCATCAACAGTCCAGCAGGGAGTTACACTTGTTCTTGTCTAAAGGGATACGGCGATGGCAAGATCAATGGAAGCAGATGTGTTACCAAGAGTAACCGCAAAATAATAATTGCTTTCAGTGTGAGTGGAAGTATATTGGCACTTATGGGAGGAACCTTATACATGTACTGCACATTAAAGAAAAGAAAACTCAACAAACTTAAAGAACATTTTTTTCAACTAAACGGTGGTTTGTTATTACAACAATATATAGGCAGGTACAGTGGATCAAATGAATTGACAAAAATCTTTACTGTGAAAGAACTAAAAGAGGCCACCAACAATTTCAATGAAGAGATGGTCTTAGGCAAAGGTGGGGAGGGAACAGTTTACAAAGGAATATTACCTGACAATAGAATTGTAGCAATAAAAAGGTCCAGAGTTAGTAACCCAAACCAAACTGAGCATTTCATCAATGAGGTGATTCTGCTTTGTCAAATCAACCATAGAAATGTGGTGAAACTCTTGGGATGTTGTTTAGAGACAAAGGTTCCCTTACTTGTTTATGAATTTGTTCCCAATGGAACTGTTTACGAGCATCTCCACGATCAAAGCAAATCTTTAAGACTTACATGGAAAAGAAGATTACAAATAGCAGTTGAAACTGCTGGGGCCCTAGCATACTTGCATTCTGCTACCCATGCACCAATCATACATAGAGATGTGAAAACTTCAAACATACTACTTGATCACAATCTCACTGCAAAGGTTTCTGATTTCGGAGCTTCAAAGATTATTCCTCTTGATCGAACTCAGTTAACAACTTTGGTGTTGGGGACACTAGGGTATCTTGACCCAGAATACTTCCACTCAAGCCAGTTAACAGAGAAAAGTGATGTCTACAGTTTTGGAGTTGTCCTAGTCGAACTACTAACAGGAAAGAAGGCACTCTCTTTTGAAAGGCCAGAGGCTCATAGAAACCTAGCGATTCACTTCCATTCTTCAATGAAGGAGGGTCGGTTACTTGAAATTTTCGATGATCGCATAATAGATGAGGCAAATGTTGAGCAACTAATGGATGTTGTAAACATTGCAAGCCATTGTTTAAGGTTGAAGGGGGAGGAAAGGCCCACCATGAGAGAAGTGGCAATGCAACTTGAAGGAATCAACATTGTGGAGAAGCACCAATGGGAAAACGTGAACTTGTCATTAGAGAATGCTGAATCTATTCTCAAAGCAACACCATCATCTTCTTTTAGTGTAGATGGTGTTAACAACATAAGCATGCATTCTGGCTCTGATGTTTTAAACCAAATTTCCTTCTCCTTAACTAGAGGAAGATGA 2325 0.4077 MVKQLLLVVFLTAAAAAAKAHPVTKPNCPTKCGNVSIPFPFGLTKLCSLNTSFLITCNKSLSPPIPFLNTTNNEKVRVLDISLDGQLHVSLPVATSCVNNKNGESDKDFFFFRLYTPFHLSSRQNKLTVLGAYTAGVVYDDYFRFWRTYPPTYCVSFYSSDLYNKTHDESCSGTFCCETPIQHRLSELYYACAANIFDYNSTRREFLSYPCGYTFLAKEGAYNFSMSDFINFNTSNTFPVVVDWAVGNRCPAAKKNASSYACKSKDSECHNAKLGPGYHCNCSTGFRGNPYLLDGCQGLYILLLLIIFNKLVNYLLDIDECTEESHNCLKGKSKCINSPAGSYTCSCLKGYGDGKINGSRCVTKSNRKIIIAFSVSGSILALMGGTLYMYCTLKKRKLNKLKEHFFQLNGGLLLQQYIGRYSGSNELTKIFTVKELKEATNNFNEEMVLGKGGEGTVYKGILPDNRIVAIKRSRVSNPNQTEHFINEVILLCQINHRNVVKLLGCCLETKVPLLVYEFVPNGTVYEHLHDQSKSLRLTWKRRLQIAVETAGALAYLHSATHAPIIHRDVKTSNILLDHNLTAKVSDFGASKIIPLDRTQLTTLVLGTLGYLDPEYFHSSQLTEKSDVYSFGVVLVELLTGKKALSFERPEAHRNLAIHFHSSMKEGRLLEIFDDRIIDEANVEQLMDVVNIASHCLRLKGEERPTMREVAMQLEGINIVEKHQWENVNLSLENAESILKATPSSSFSVDGVNNISMHSGSDVLNQISFSLTRGR 774
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3615g00011 774 FunFam Wall-associated receptor kinase 2 519 736 - -
Vium3615g00011 774 CDD STKc_IRAK 449 716 - -
Vium3615g00011 774 Gene3D Phosphorylase Kinase; domain 1 415 518 - -
Vium3615g00011 774 Gene3D Laminin 248 362 - -
Vium3615g00011 774 ProSitePatterns Serine/Threonine protein kinases active-site signature. 564 576 IPR008271 GO:0004672|GO:0006468
Vium3615g00011 774 Pfam Calcium-binding EGF domain 317 357 IPR001881 GO:0005509
Vium3615g00011 774 ProSiteProfiles Protein kinase domain profile. 443 725 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3615g00011 774 ProSiteProfiles EGF-like domain profile. 317 362 IPR000742 -
Vium3615g00011 774 SUPERFAMILY EGF/Laminin 315 354 - -
Vium3615g00011 774 SMART serkin_6 443 716 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3615g00011 774 SMART egfca_6 317 362 IPR001881 GO:0005509
Vium3615g00011 774 Gene3D Transferase(Phosphotransferase) domain 1 519 737 - -
Vium3615g00011 774 FunFam Wall-associated receptor kinase 2 413 518 - -
Vium3615g00011 774 CDD EGF_CA 317 351 - -
Vium3615g00011 774 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 15 719 IPR045274 GO:0007166
Vium3615g00011 774 SUPERFAMILY Protein kinase-like (PK-like) 427 719 IPR011009 -
Vium3615g00011 774 SMART egf_5 320 362 IPR000742 -
Vium3615g00011 774 SMART egf_5 261 297 IPR000742 -
Vium3615g00011 774 Pfam Protein kinase domain 444 709 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3615g00011 774 Pfam Wall-associated receptor kinase galacturonan-binding 28 87 IPR025287 GO:0030247
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3615g00011 Vium-Chr3615 95826 98858 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3615g00011 5 726 Receptor kinase-like Gene Family AT1G21230 41.473 2.68e-179 530
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Vium3615g00011 Pkinase 1.1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3615g00011 - - vum:124835050 1544.64