Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3614g00002 ATGGAGTACGGCAATTGGGCTGAATCGCTGCAAACAGAAACCCCACTCCTCTCTTTCCCCCAACCTTCCTCATCATCTTATGCTCCTGCACCATCTCAGACCACCCATTATCCCTCTTACCCTCAAAACCCTAACCCCTCTTCTTCTCTTCCCCTCAAACCTCCTGGGGTTGATTCCCTTCCGCCCTCCAACCCTATTATGTATTCGAATCATGAATCTGTTCCCATTCCCAGTTTGATCTATCCCCAGACCCATGTTGGGACTGGTTCTGATTCTGGGTACTATGTAAACCAGAACTGGGCTGCCAGAGAAGCTGTTAGGCAATTTGGTTCTGACCCAACTGTCTATGCGCCTGGTATCTCTATACCATCCAATGGCTCAGAACAATCGGCTATGTGGTGGGCAAATACTGCAGCTCAACTTCATGGCAATGGAATACTGAATAAAAAACAAAAGAAAGCTAAAACTAAGGTTGTGCAACCTGCATATTGTGAAGTTTGCAAGATAGAATGCACTGGCAAGGAAGTGCTGGACCAACATAAATTAGGAAAGAAGCACAAAAGGAACTTGGAAAAACTAAGAGAGTCATTGAAATCAACCCAAGTTCAACCATCTGGGTCATCTAATCCCGTAATAGGACCCCAATTACCAGACAACAAGAGCAAATCAACCACCAGTGGGAACAAGATTAAGAGAAAAAAAGCTGAAACCCTTGAAGACTTGGAGAAAAAGAAAAAGAAGGTTCTTGATGGTGGGGCAGCAGCTGAAGCAGTTAAGATATGTGCTATATGTAACGTGGTGTGTAATAGTGAGACAGTCTATAATTTTCATCTTACTGGACAAAAGCATGCTGCTATGCTGAAGAAAGCATATGATCATACACAGTCCTATGCCAGTTGA 900 0.4389 MEYGNWAESLQTETPLLSFPQPSSSSYAPAPSQTTHYPSYPQNPNPSSSLPLKPPGVDSLPPSNPIMYSNHESVPIPSLIYPQTHVGTGSDSGYYVNQNWAAREAVRQFGSDPTVYAPGISIPSNGSEQSAMWWANTAAQLHGNGILNKKQKKAKTKVVQPAYCEVCKIECTGKEVLDQHKLGKKHKRNLEKLRESLKSTQVQPSGSSNPVIGPQLPDNKSKSTTSGNKIKRKKAETLEDLEKKKKKVLDGGAAAEAVKICAICNVVCNSETVYNFHLTGQKHAAMLKKAYDHTQSYAS 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3614g00002 299 SUPERFAMILY beta-beta-alpha zinc fingers 258 290 IPR036236 -
Vium3614g00002 299 MobiDBLite consensus disorder prediction 14 68 - -
Vium3614g00002 299 PANTHER ZINC FINGER PROTEIN 385B-LIKE 20 292 - -
Vium3614g00002 299 MobiDBLite consensus disorder prediction 197 224 - -
Vium3614g00002 299 MobiDBLite consensus disorder prediction 14 43 - -
Vium3614g00002 299 MobiDBLite consensus disorder prediction 44 61 - -
Vium3614g00002 299 MobiDBLite consensus disorder prediction 197 233 - -
Vium3614g00002 299 Pfam Zinc-finger of C2H2 type 163 186 - -
Vium3614g00002 299 Pfam Zinc-finger of C2H2 type 260 283 - -
Vium3614g00002 299 Gene3D Classic Zinc Finger 226 290 - -
Vium3614g00002 299 Gene3D Classic Zinc Finger 147 193 - -
Vium3614g00002 299 SUPERFAMILY beta-beta-alpha zinc fingers 156 194 IPR036236 -
Vium3614g00002 299 Coils Coil 183 203 - -
Vium3614g00002 299 SMART ZnF_U1_5 159 193 IPR003604 GO:0003676|GO:0008270
Vium3614g00002 299 SMART ZnF_U1_5 256 290 IPR003604 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3614g00002 Vium-Chr3614 19957 22960 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3614g00002 164 293 C2H2 Transcription Factor Family AT5G61190 32.394 2.82e-09 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3614g00002 - - gmx:100814580 376.711