Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3603g00001 ATGTCATCTCGCATTGTTGCGGACAATTCATTAGCGATCAATAATGTCACCACTCCCTACTTCGACTTAATGGAAATGGACGACCTCACGCGCCGCCCCGCCTCCGCTGAGATGCCCACCCTTGGCCAGCTCCTCAAGCACGTCGGGGACGCCAGGAAGGAAGCCTCCGGCGACGGAAGCGAGACGCCGGTGCATCACGCGCTAGATATAGTTGACGCCGCCGGAGTTGGGCCTCGCTCGCTGCCATTCGTCCTCTCCTTCAGCAACCTCACATACAGCGTCAAGGCGCGCCGCAAAATGAGCCTCTCCTCTGTCTTTCCATGCCGTGGAAGCCGCCTCGGCGCGTCCGCGGTATCCGAGGCTCCTGCCGTCGGCGAGAGCATGTTCAGGCGGACCAAGACGCTCCTTAACGATATCTCCGGCGAGGCGCGCGACGGCGAGATCATGGCGGTACTCGGCGCCAGCGGTTCTGGAAAGTCAACACTGATCGACGCGCTGGCGAACCGAATCGCCAAGGGAAGTCTAAAAGGCACGGTGGCGCTGAACGGCGAAACGCTGGAATCGCGTCTGCTGAAGGTGATCTCTGCGTACGTGATGCAAGACGACCTGCTCTTCCCGATGCTCACCGTGGAAGAGACTTTGATGTTCGCAGCGGAATTCAGACTTCCTCGCACGCTCTCCAAGTCGAAGAAAAACGCCCGCGTCCAGGCTCTCATCGAGCAGCTAGGTCTTCGGAACGCCGCGAAAACAGTTATCGGCGACGAAGGTCACCGCGGAGTATCAGGCGGAGAGCGTCGGAGAGTTTCCATCGGCATCGACATTATCCACGACCCTATCCTGCTGTTCCTGGACGAGCCAACCTCGGGACTTGACTCCACCAGCGCGTTCTTGGTGGTGAAGGTTTTGCAGAGAATCGCACAGAGCGGAAGCATCGTGATCATGTCCATTCACCAACCGAGTTACCGAATCCTAGGACCTTCAACCTTCCTTCTCCAACTCATCAACCACTTCAACACCATCACTCCCTCTGAAGCTCCCCCAGAAGCAATGTCATCTCGCATTGTTGCGGACAATTCATTAGCGATCAATAATGTCACCACTCCCTACTTCGACTTAATGGAAATGGACGACCTCACGCGCCGCCCCGCCTCCGCTGAGATGCCCACCCTTGGCCAGCTCCTCAAGCACGTCGGGGACGCCAGGAAGGAAGCCTCCGGCGACGGAAGCGAGACGCCGGTGCATCACGCGCTAGATATAGTTGACGCCGCCGGAGTTGGGCCTCGCTCGCTGCCATTCGTCCTCTCCTTCAGCAACCTCACATACAGCGTCAAGGCGCGCCGCAAAATGAGCCTCTCCTCTGTCTTTCCATGCCGTGGAAGCCGCCTCGGCGCGTCCGCGGTATCCGAGGCTCCTGCCGTCGGCGAGAGCATGTTCAGGCGGACCAAGACGCTCCTTAACGATATCTCCGGCGAGGCGCGCGACGGCGAGATCATGGCGGTACTCGGCGCCAGCGGTTCTGGAAAGTCAACACTGATCGACGCGCTGGCGAACCGAATCGCCAAGGGAAGTCTAAAAGGCACGGTGGCGCTGAACGGCGAAACGCTGGAATCGCGTCTACTGAAGGTGATCTCTGCGTACGTGATGCAAGACGACCTGCTCTTCCCGATGCTCACCGTGGAAGAGACTTTGATGTTCGCAGCGGAATTCAGACTTCCTCGCACGCTCTCCAAGTCGAAGAAAAACGCCCGCGTCCAGGCTCTCATCGAGCAGCTAGGACTTCGGAACGCCGCGAAAACAGTTATCGGCGACGAAGGTCACCGCGGAGTATCAGGCGGAGAGCGTCGAAGAGTTTCCATCGGCATCGACATTATCCACGACCCTATCCTTCTGTTCCTGGACGAGCCAACCTCGGGACTTGACTCCACCAGCGCGTTCTTGGTGGTGAAGGTTTTGCAGAGAATCGCACAGAGCGGAAGCATCGTGATCATGTCCATTCACCAACCGAGTTACCGAATCCTAGGGCTTCTAGACCGCATGATCTTCTTATCACGGGGCCAAACCGTTTACAGCGGTTCACCGTCGCAGTTACCGGTTTTCTTCTCCGAGTTCGGTCATCCGATTCCGGAAACCGACAACAGAACGGAATTCGCGTTGGACCTGATTCGCGAACTGGAAGGCTCCCCCGGCGGAACGAAGAGCTTGGTCGAGTTCAACAAATCGTGGCAGAGCATGACGAAGCACCATCAAACGACAACAGAGGCGGAACGGAACGGGTTGTCGTTGAAGGAAGCAATAAGCGCGAGCATTTCGCGAGGGAAACTGGTTTCTGGAGCCACGAACACGAACCCGAACCCGTCGTCGATGGTGCCAACTTTTGCGAATCCGTTTTGGATTGAGATGGCGACGCTGTCGAAGCGGTCGTTCTTGAACTCGAGAAGAATGCCGGAGTTGTTTGGGATAAGATTGGGTGCGGTGATGGTGACGGGGTTCATTCTTGCGACCATGTTTTGGCAACTGGATAACTCTCCAAAAGGAGTGCAAGAGAGGCTGGGATTCTTCGCCTTTGCCATGTCAACAACTTTCTACACCACTGCCGACGCGCTTCCCGTCTTCCTCCAAGAACGCTACATTTTCATGAGGGAAACTGCTTACAACGCTTACAGAAGAATCTCCTATTTGGTCTCGCATGCGCTGGTTGCGTTGCCGGCACTAGCGTTTCTCTCGTTGGCTTTCGCGGCAACCACGTTCTGGGCCGTGGGCCTGGACGGTGGAGTTTCGGGCTTTTTGTTTTATTTCCTGATTATATTTGCGTCGTTTTGGGCTGGGAATTCGTTCGTGACGTTCCTTTCCGGTGTGGTGCCTCACGTGATGCTGGGTTACACCATCGTGGTTGCCATTCTCGCGTATTTCTTGCTGTTCAGTGGATTCTTCATCAACAGGGATAGGATTCCCAGTTACTGGATTTGGTTCCACTACCTGTCACTGGTGAAGTACCCTTATGAAGCTGTTTTGCAGAACGAGTTCGATGACCCAGTGAAGTGCTTCGTGAGGGGGGTACAGATTTTCGATAACACGCCTCTTGGGTCGGTGCCCCAGGCTCTGAAGGTTAAGCTTTTGGACGCCATGAGCAACACTCTCGGAATGAACATCACCACCTCCACCTGTTTGACCACCGGTTCCGACATTTTGCGGCAGAACGGGGTCACCGATTTGACCAAGTGGAACTGCTTGTGGGTCACCGTCGCCTGGGGATTCTTCTTTAGATTCTTGTTCTACTTCTCCCTCTTGCTGGGTAGCAAGAACAAGAGGAACTGA 3315 0.5596 MSSRIVADNSLAINNVTTPYFDLMEMDDLTRRPASAEMPTLGQLLKHVGDARKEASGDGSETPVHHALDIVDAAGVGPRSLPFVLSFSNLTYSVKARRKMSLSSVFPCRGSRLGASAVSEAPAVGESMFRRTKTLLNDISGEARDGEIMAVLGASGSGKSTLIDALANRIAKGSLKGTVALNGETLESRLLKVISAYVMQDDLLFPMLTVEETLMFAAEFRLPRTLSKSKKNARVQALIEQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFLVVKVLQRIAQSGSIVIMSIHQPSYRILGPSTFLLQLINHFNTITPSEAPPEAMSSRIVADNSLAINNVTTPYFDLMEMDDLTRRPASAEMPTLGQLLKHVGDARKEASGDGSETPVHHALDIVDAAGVGPRSLPFVLSFSNLTYSVKARRKMSLSSVFPCRGSRLGASAVSEAPAVGESMFRRTKTLLNDISGEARDGEIMAVLGASGSGKSTLIDALANRIAKGSLKGTVALNGETLESRLLKVISAYVMQDDLLFPMLTVEETLMFAAEFRLPRTLSKSKKNARVQALIEQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFLVVKVLQRIAQSGSIVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPSQLPVFFSEFGHPIPETDNRTEFALDLIRELEGSPGGTKSLVEFNKSWQSMTKHHQTTTEAERNGLSLKEAISASISRGKLVSGATNTNPNPSSMVPTFANPFWIEMATLSKRSFLNSRRMPELFGIRLGAVMVTGFILATMFWQLDNSPKGVQERLGFFAFAMSTTFYTTADALPVFLQERYIFMRETAYNAYRRISYLVSHALVALPALAFLSLAFAATTFWAVGLDGGVSGFLFYFLIIFASFWAGNSFVTFLSGVVPHVMLGYTIVVAILAYFLLFSGFFINRDRIPSYWIWFHYLSLVKYPYEAVLQNEFDDPVKCFVRGVQIFDNTPLGSVPQALKVKLLDAMSNTLGMNITTSTCLTTGSDILRQNGVTDLTKWNCLWVTVAWGFFFRFLFYFSLLLGSKNKRN 1104
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3603g00001 1104 ProSitePatterns ABC transporters family signature. 609 623 IPR017871 GO:0005524|GO:0016887
Vium3603g00001 1104 Pfam ABC-2 type transporter 802 1008 IPR013525 GO:0016020|GO:0140359
Vium3603g00001 1104 FunFam ABC transporter G family member 6 474 700 - -
Vium3603g00001 1104 Pfam ABC-2 type transporter 666 726 IPR043926 GO:0140359
Vium3603g00001 1104 CDD ABCG_EPDR 433 691 - -
Vium3603g00001 1104 ProSitePatterns ABC transporters family signature. 260 274 IPR017871 GO:0005524|GO:0016887
Vium3603g00001 1104 SMART AAA_5 145 341 IPR003593 GO:0016887
Vium3603g00001 1104 SMART AAA_5 494 686 IPR003593 GO:0016887
Vium3603g00001 1104 Gene3D - 475 698 IPR027417 -
Vium3603g00001 1104 Gene3D - 126 325 IPR027417 -
Vium3603g00001 1104 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 462 709 IPR003439 GO:0005524
Vium3603g00001 1104 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 415 1090 - -
Vium3603g00001 1104 Pfam ABC transporter 136 288 IPR003439 GO:0005524
Vium3603g00001 1104 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 113 367 IPR003439 GO:0005524
Vium3603g00001 1104 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 131 321 IPR027417 -
Vium3603g00001 1104 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 480 696 IPR027417 -
Vium3603g00001 1104 Pfam ABC transporter 485 637 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3603g00001 Vium-Chr3603 11276 16238 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3603g00001 484 696 Calmodulin-binding Proteins AT2G36910 29.091 2.35e-11 66.6