Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3599g00001 ATGGCAATGCAGTGGTCAATTGTAGACGATGGCTTTATCATTGAATTTGTGATTCAAGATCACCGCAATAACGCCCATAGTAGAAATTTAAGATCAGCCGAAGAAGATGGTGAAGTTTATATCATTGATGCCGTGAACTTGGGTGGCAGCAACATGCAAAACAATAACAATAGAAGTTTAAGATCAAGCCAAGACAGTGTTTTGATCTTCGATTCAGTGCAAAACAACTATAATCCTTTGAAAAATCTTGAAAGGTTTATAATTGAAGAAAAAACAGAAGATTCTTGCAGCATATGTCTTGAGGAACTTGCAATTGGATCAAGAGCAGTTCGCATACCCCATCCATGTTCTCATATCTTTCATCACCACTGCATCAAAAAATGGCTCGACATCAATCTCACTTGTCCTTTGTGTCGCAGGAACATATAG 429 0.38 MAMQWSIVDDGFIIEFVIQDHRNNAHSRNLRSAEEDGEVYIIDAVNLGGSNMQNNNNRSLRSSQDSVLIFDSVQNNYNPLKNLERFIIEEKTEDSCSICLEELAIGSRAVRIPHPCSHIFHHHCIKKWLDINLTCPLCRRNI 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3599g00001 142 SUPERFAMILY RING/U-box 85 142 - -
Vium3599g00001 142 Pfam Ring finger domain 94 139 IPR001841 -
Vium3599g00001 142 PANTHER TARGET OF ERK KINASE MPK-1 47 142 - -
Vium3599g00001 142 ProSiteProfiles Zinc finger RING-type profile. 96 139 IPR001841 -
Vium3599g00001 142 SMART ring_2 96 138 IPR001841 -
Vium3599g00001 142 CDD RING-H2 96 139 - -
Vium3599g00001 142 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 51 142 IPR013083 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3599g00001 61 139 C3H Transcription Factor Family AT1G14200 37.209 3.48e-12 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3599g00001 - K22753 pvu:PHAVU_007G098000g 116.316