Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3597g00003 ATGGCAGAAGTGATTGGCACATATTTTGTGGTATTTGCTGGTTGTGGATCTGTGGCAGTGAATAAGATCTATGGCTCAGTCACATTTCCAGGCATTTGTGTGACATGGGGACTCATCGTAATGGTCATGTTTTACACTGTTGGTCATATCTCTGGAGCACACTTCAACCCTGCAGTCACCATCACTTTAGCCATTTTCCGCCGCTTCTCATATAAACAGGTGCCACTGTACATTTTTGCTCAGTTACTGGGGTCTATACTTGCAAGTGGCACACTAGCCCTAATGTAGGATTTAACTCCTAAATCTTTCTTTGGAACGATACCAGTTGGATCCAATGTCCAATCTTTAGCTGCTGAAATCACCATCACCTTTCTCTTGATGTTTGTTATATCTGCTGTTACTACAGACGACAGAGCGGTGGGTGATTTTGCAGGAGTTGTAGTTGGGATGACTATAATGTTGAATGTCTTCGTTGCCGGGCCTGTGTCAGGAGCTTCCATGAACCCTGCAAGTAGTATTGGTCCTTCGCTTATTATACATGTTTACAAAGGGTTGTGGATATACGTCGTTGGTCCAATTATTGGAGCCATAGCTGGAGCACTAGCTTATAACTTTCTTAGATCCACCACACACAATTCTCCTTCAGAAGAAATCAAAGGGCCTTCTTCAGGTTGA 675 0.4341 MAEVIGTYFVVFAGCGSVAVNKIYGSVTFPGICVTWGLIVMVMFYTVGHISGAHFNPAVTITLAIFRRFSYKQVPLYIFAQLLGSILASGTLALMXDLTPKSFFGTIPVGSNVQSLAAEITITFLLMFVISAVTTDDRAVGDFAGVVVGMTIMLNVFVAGPVSGASMNPASSIGPSLIIHVYKGLWIYVVGPIIGAIAGALAYNFLRSTTHNSPSEEIKGPSSG 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3597g00003 224 PRINTS Major intrinsic protein family signature 36 60 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium3597g00003 224 PRINTS Major intrinsic protein family signature 149 171 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium3597g00003 224 PRINTS Major intrinsic protein family signature 118 136 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium3597g00003 224 PRINTS Major intrinsic protein family signature 186 206 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium3597g00003 224 PRINTS Major intrinsic protein family signature 73 92 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium3597g00003 224 ProSitePatterns MIP family signature. 54 62 IPR022357 -
Vium3597g00003 224 Gene3D Glycerol uptake facilitator protein. 1 218 IPR023271 -
Vium3597g00003 224 Pfam Major intrinsic protein 1 203 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium3597g00003 224 NCBIfam MIP family channel protein 2 203 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium3597g00003 224 PANTHER AQUAPORIN NIP2-1 1 211 IPR034294 -
Vium3597g00003 224 SUPERFAMILY Aquaporin-like 1 215 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3597g00003 Vium-Chr3597 25693 27150 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3597g00003 1 223 Major Intrinsic Protein MIP AT5G37820 64.286 2.02e-102 297
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3597g00003 K09874 - gmx:100791338 361.303