Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vium3597g00002 | ATGGAGGAGGCTCCTCCGGCGGAAGCAGTGGCCGTACGGCGAGCGTTGGAGCTGCTGCGGCTAAACGACCCCGTTCTGAGGGTCCAAGCGGCCAAGGACATCCGCCGCCTCACTAAAACCTCCCACCGCTGCCGCCGCCAACTCCGTCAGGCCGTCACCCCACTCGTCTCCATGCTCCGAGTCGACTCGCCCGAGTTCCACGAACCCGCCCTTCTCGCTCTCCTCAACCTCGCCGTACAAGACGAAAAGAACAAAATTAGCATTGTGGAAGCTGGTGCATTAGAGCCGATAATCAGTTTCCTCAAGTCAGAAAATCCAAATCTGCGGGAGTATGCAACTGCATCTTTGCTCACTCTATCTGTCTCTCCAACAAACAAACCAATAATCAGTGCTTGTGGCGCGATTCCTCTGCTTGTAAATACTCTTAAAGATGGAAGCCCTCAAGCTAAAGTTGATGCTGTGACGGCTCTGTCTAGTTTATCAACACACCCTGAAAACCTGAGCATTATTCTCGAAATAAATGCAATGCCTTTTATAGTTAATCTTCTCAACACCTGTAGAAAATCCTCAAAAATAGCTGAAAAATGTTGTGCTCTGATAGAATCCTTGGTGGGTTATGAGGAGGGTAGAACCGCCTTAACATCTGAAGAAGGTGGGGTTCTTGCAGTCGTGGAAGTTCTTGAAAATGGCACTCCCCAGAGTAGGGAACATGCTGTTGGAGCACTGCTGAGAATGTGTGAAAGTGATAGATGTAAATACAGGGAACCGATTCTCAGAGAAGGTGTTATTCCGGGACTTCTTGAGCTGACAGTTCAAGGAACCCCTAAATCACAGCCAAAAGCACGTACCCTTTTGCAGTTACTCAGAGAGTCTCCATATTCAAGACCTGAAGTCGAACCGGACACTCTTCAGAACATAGTTTGTGACATCATATCACAGATTGATGGAGATGATCAATCTGGTAAAGCGAAGAAGATGCTGGCTGAGATGGTCCAAGTAAGCATGGAGCAGAGTTTGAGACATTTGCAGCAAAGGGCTCTTGTATGTACTCCTTCTGATATGCCTATCACAAGTTGTGCTTCTGAAGTTTCTTCAAAATAG | 1101 | 0.4777 | MEEAPPAEAVAVRRALELLRLNDPVLRVQAAKDIRRLTKTSHRCRRQLRQAVTPLVSMLRVDSPEFHEPALLALLNLAVQDEKNKISIVEAGALEPIISFLKSENPNLREYATASLLTLSVSPTNKPIISACGAIPLLVNTLKDGSPQAKVDAVTALSSLSTHPENLSIILEINAMPFIVNLLNTCRKSSKIAEKCCALIESLVGYEEGRTALTSEEGGVLAVVEVLENGTPQSREHAVGALLRMCESDRCKYREPILREGVIPGLLELTVQGTPKSQPKARTLLQLLRESPYSRPEVEPDTLQNIVCDIISQIDGDDQSGKAKKMLAEMVQVSMEQSLRHLQQRALVCTPSDMPITSCASEVSSK | 366 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vium3597g00002 | 366 | Pfam | Armadillo/beta-catenin-like repeat | 125 | 161 | IPR000225 | GO:0005515 | |
Vium3597g00002 | 366 | Pfam | Armadillo/beta-catenin-like repeat | 82 | 117 | IPR000225 | GO:0005515 | |
Vium3597g00002 | 366 | ProSiteProfiles | Armadillo/plakoglobin ARM repeat profile. | 133 | 175 | IPR000225 | GO:0005515 | |
Vium3597g00002 | 366 | SMART | arm_5 | 122 | 162 | IPR000225 | GO:0005515 | |
Vium3597g00002 | 366 | SMART | arm_5 | 81 | 121 | IPR000225 | GO:0005515 | |
Vium3597g00002 | 366 | SMART | arm_5 | 206 | 247 | IPR000225 | GO:0005515 | |
Vium3597g00002 | 366 | SMART | arm_5 | 163 | 205 | IPR000225 | GO:0005515 | |
Vium3597g00002 | 366 | SMART | arm_5 | 40 | 79 | IPR000225 | GO:0005515 | |
Vium3597g00002 | 366 | ProSiteProfiles | Armadillo/plakoglobin ARM repeat profile. | 174 | 218 | IPR000225 | GO:0005515 | |
Vium3597g00002 | 366 | FunFam | U-box domain-containing protein 4 | 1 | 348 | - | - | |
Vium3597g00002 | 366 | PANTHER | U BOX DOMAIN-CONTAINING | 11 | 292 | - | - | |
Vium3597g00002 | 366 | SUPERFAMILY | ARM repeat | 12 | 309 | IPR016024 | - | |
Vium3597g00002 | 366 | Gene3D | - | 2 | 347 | IPR011989 | - | |
Vium3597g00002 | 366 | ProSiteProfiles | Armadillo/plakoglobin ARM repeat profile. | 50 | 92 | IPR000225 | GO:0005515 | |
Vium3597g00002 | 366 | ProSiteProfiles | Armadillo/plakoglobin ARM repeat profile. | 92 | 134 | IPR000225 | GO:0005515 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vium3597g00002 | Vium-Chr3597 | 17531 | 21147 | Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vium3597g00002 | 12 | 289 | U-box Gene Family | AT2G23140 | 34.286 | 4.85e-40 | 148 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vium3597g00002 | - | - | gmx:100793971 | 613.224 |