Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3597g00002 ATGGAGGAGGCTCCTCCGGCGGAAGCAGTGGCCGTACGGCGAGCGTTGGAGCTGCTGCGGCTAAACGACCCCGTTCTGAGGGTCCAAGCGGCCAAGGACATCCGCCGCCTCACTAAAACCTCCCACCGCTGCCGCCGCCAACTCCGTCAGGCCGTCACCCCACTCGTCTCCATGCTCCGAGTCGACTCGCCCGAGTTCCACGAACCCGCCCTTCTCGCTCTCCTCAACCTCGCCGTACAAGACGAAAAGAACAAAATTAGCATTGTGGAAGCTGGTGCATTAGAGCCGATAATCAGTTTCCTCAAGTCAGAAAATCCAAATCTGCGGGAGTATGCAACTGCATCTTTGCTCACTCTATCTGTCTCTCCAACAAACAAACCAATAATCAGTGCTTGTGGCGCGATTCCTCTGCTTGTAAATACTCTTAAAGATGGAAGCCCTCAAGCTAAAGTTGATGCTGTGACGGCTCTGTCTAGTTTATCAACACACCCTGAAAACCTGAGCATTATTCTCGAAATAAATGCAATGCCTTTTATAGTTAATCTTCTCAACACCTGTAGAAAATCCTCAAAAATAGCTGAAAAATGTTGTGCTCTGATAGAATCCTTGGTGGGTTATGAGGAGGGTAGAACCGCCTTAACATCTGAAGAAGGTGGGGTTCTTGCAGTCGTGGAAGTTCTTGAAAATGGCACTCCCCAGAGTAGGGAACATGCTGTTGGAGCACTGCTGAGAATGTGTGAAAGTGATAGATGTAAATACAGGGAACCGATTCTCAGAGAAGGTGTTATTCCGGGACTTCTTGAGCTGACAGTTCAAGGAACCCCTAAATCACAGCCAAAAGCACGTACCCTTTTGCAGTTACTCAGAGAGTCTCCATATTCAAGACCTGAAGTCGAACCGGACACTCTTCAGAACATAGTTTGTGACATCATATCACAGATTGATGGAGATGATCAATCTGGTAAAGCGAAGAAGATGCTGGCTGAGATGGTCCAAGTAAGCATGGAGCAGAGTTTGAGACATTTGCAGCAAAGGGCTCTTGTATGTACTCCTTCTGATATGCCTATCACAAGTTGTGCTTCTGAAGTTTCTTCAAAATAG 1101 0.4777 MEEAPPAEAVAVRRALELLRLNDPVLRVQAAKDIRRLTKTSHRCRRQLRQAVTPLVSMLRVDSPEFHEPALLALLNLAVQDEKNKISIVEAGALEPIISFLKSENPNLREYATASLLTLSVSPTNKPIISACGAIPLLVNTLKDGSPQAKVDAVTALSSLSTHPENLSIILEINAMPFIVNLLNTCRKSSKIAEKCCALIESLVGYEEGRTALTSEEGGVLAVVEVLENGTPQSREHAVGALLRMCESDRCKYREPILREGVIPGLLELTVQGTPKSQPKARTLLQLLRESPYSRPEVEPDTLQNIVCDIISQIDGDDQSGKAKKMLAEMVQVSMEQSLRHLQQRALVCTPSDMPITSCASEVSSK 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3597g00002 366 Pfam Armadillo/beta-catenin-like repeat 125 161 IPR000225 GO:0005515
Vium3597g00002 366 Pfam Armadillo/beta-catenin-like repeat 82 117 IPR000225 GO:0005515
Vium3597g00002 366 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 133 175 IPR000225 GO:0005515
Vium3597g00002 366 SMART arm_5 122 162 IPR000225 GO:0005515
Vium3597g00002 366 SMART arm_5 81 121 IPR000225 GO:0005515
Vium3597g00002 366 SMART arm_5 206 247 IPR000225 GO:0005515
Vium3597g00002 366 SMART arm_5 163 205 IPR000225 GO:0005515
Vium3597g00002 366 SMART arm_5 40 79 IPR000225 GO:0005515
Vium3597g00002 366 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 174 218 IPR000225 GO:0005515
Vium3597g00002 366 FunFam U-box domain-containing protein 4 1 348 - -
Vium3597g00002 366 PANTHER U BOX DOMAIN-CONTAINING 11 292 - -
Vium3597g00002 366 SUPERFAMILY ARM repeat 12 309 IPR016024 -
Vium3597g00002 366 Gene3D - 2 347 IPR011989 -
Vium3597g00002 366 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 50 92 IPR000225 GO:0005515
Vium3597g00002 366 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 92 134 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3597g00002 Vium-Chr3597 17531 21147 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3597g00002 12 289 U-box Gene Family AT2G23140 34.286 4.85e-40 148
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3597g00002 - - gmx:100793971 613.224