Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3594g00041 ATGGAGCAGTACGGCCGGTCCAGTGAAGGTTCGCGGTCTGATCCGTCCCCGGAATGGGCCGGGCCCGGAGCCCAAACCGGTCTTGAAGAGCCTATGTGGCAATTGGGGCTGGGTGCTGCGGAGGAATCGTATCCGCAACGCCCCGATGAGGCTGATTGCACTTACTACTTGAGGACCGGTTTCTGTGGCTTCGGTTCGCGGTGTCGGTACAATCACCCTCGTGACCGTGGCACGTTTGTTGGAGCTGAGAGGACTGCGGGGGAGTATCCGGAACGAGTTGGCCAACCTGTGTGCCAGTATTACATGAGGACTAGAACGTGCAAGTTTGGTTCGTCTTGCAAGTACCACCACCCGAGGCTAGCAGGAGGATCTGCTACCCCTGTGTCACTAAACTATTATGGATATCCATTGCGTCCGGGTGAAAAGGAGTGCTCATATTATGTGAAAACGGGACAATGCAAGTTTGGTGCGACTTGTAAATTCCATCATCCGGTTCCTGCTGGCGTCCAAATTCCAGCACCATCACCAGTTGCTCCAGTTTCGCCTTTGCCTGTACCAGTGCCTTCACCGTTATATTCAACCATGCAGCCCCCACCTGGTCCTTCATCACAGCAAATTGGTGTGCTGGTTGCAAGGCCTCCTCTGCTGCCTGGCTCATTAGTCCAGAGTCCCTATGGACCTGTGGTACTGTCACCTGCCATGGTACCTATTTCTGGCTGGGGTCCTTATCAAGCTTCTGGAACAGGTGCTGTACTTCCTTCCGGTACTCCTAATGTTGGTTCAGCACAGCTTTATGGGATGACACAACTGCCTTCATCAGCAGCTGCCTATCCTGGACCTTATCAACTTCCTGGTTCCTTAGTTGGTCCTTCAAGCAGTAATCAGAAGGAGCAGGCATTTCCAGAAAGGTCCAATCAACCAGATTATCAGTATTATCCGAAAACAGGGGAGGTTAAAGTTGGTCCATCCTATAGGTATCACCCTCCACCAGAAATGACTGCACCAAAAGCAAATGTGACTCTTAGTCCTGGTGGTCTTCCTTTGCGCCCGGGGGCATCACCTTGTACACATTATGCACAACATGGAGTATGTAAGTTTGGTTCTGCATGCAAATTCGATCATTCTATGGGATCACTGAGTTATAGTCCATCTGCTTCTTCCCTGGCTGACATGCCTGTTGCACCCTATCCTGTGGGTTCAACAATTGGTACCCTTGCTCCATCGTCATCGTCATCAGAGTTGCGGCTGGAACTTTCCTCTGGATCCAACAAAGAGTCTGTTCCATCCAGAATGTCTTCATCGTCCGGAATGTTGACAGGGTCAATAGGCTTGACTTTGTCAACTGGTGGGCCGATTTCTCAATCAAATAGTCAGCCATCTGCTCCAAGTCTGGATCCATTAGCCACTGCCACTAGTACCACCACTAGCAATGTCTCTCACACCTCAAGCTAA 1452 0.5103 MEQYGRSSEGSRSDPSPEWAGPGAQTGLEEPMWQLGLGAAEESYPQRPDEADCTYYLRTGFCGFGSRCRYNHPRDRGTFVGAERTAGEYPERVGQPVCQYYMRTRTCKFGSSCKYHHPRLAGGSATPVSLNYYGYPLRPGEKECSYYVKTGQCKFGATCKFHHPVPAGVQIPAPSPVAPVSPLPVPVPSPLYSTMQPPPGPSSQQIGVLVARPPLLPGSLVQSPYGPVVLSPAMVPISGWGPYQASGTGAVLPSGTPNVGSAQLYGMTQLPSSAAAYPGPYQLPGSLVGPSSSNQKEQAFPERSNQPDYQYYPKTGEVKVGPSYRYHPPPEMTAPKANVTLSPGGLPLRPGASPCTHYAQHGVCKFGSACKFDHSMGSLSYSPSASSLADMPVAPYPVGSTIGTLAPSSSSSELRLELSSGSNKESVPSRMSSSSGMLTGSIGLTLSTGGPISQSNSQPSAPSLDPLATATSTTTSNVSHTSS 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3594g00041 483 PANTHER PROTEIN PHOSPHATASE RELATED 38 411 - -
Vium3594g00041 483 MobiDBLite consensus disorder prediction 286 312 - -
Vium3594g00041 483 SUPERFAMILY CCCH zinc finger 140 165 IPR036855 GO:0046872
Vium3594g00041 483 ProSiteProfiles Zinc finger C3H1-type profile. 92 120 IPR000571 GO:0046872
Vium3594g00041 483 SUPERFAMILY CCCH zinc finger 352 379 IPR036855 GO:0046872
Vium3594g00041 483 SUPERFAMILY CCCH zinc finger 49 75 IPR036855 GO:0046872
Vium3594g00041 483 SMART c3hfinal6 138 165 IPR000571 GO:0046872
Vium3594g00041 483 SMART c3hfinal6 349 376 IPR000571 GO:0046872
Vium3594g00041 483 SMART c3hfinal6 92 119 IPR000571 GO:0046872
Vium3594g00041 483 SMART c3hfinal6 47 74 IPR000571 GO:0046872
Vium3594g00041 483 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 140 164 IPR000571 GO:0046872
Vium3594g00041 483 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 95 119 IPR000571 GO:0046872
Vium3594g00041 483 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 49 74 IPR000571 GO:0046872
Vium3594g00041 483 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 352 376 IPR000571 GO:0046872
Vium3594g00041 483 MobiDBLite consensus disorder prediction 1 31 - -
Vium3594g00041 483 ProSiteProfiles Zinc finger C3H1-type profile. 138 166 IPR000571 GO:0046872
Vium3594g00041 483 Gene3D - 44 124 - -
Vium3594g00041 483 MobiDBLite consensus disorder prediction 286 311 - -
Vium3594g00041 483 MobiDBLite consensus disorder prediction 405 483 - -
Vium3594g00041 483 Gene3D - 125 171 - -
Vium3594g00041 483 ProSiteProfiles Zinc finger C3H1-type profile. 47 75 IPR000571 GO:0046872
Vium3594g00041 483 ProSiteProfiles Zinc finger C3H1-type profile. 349 377 IPR000571 GO:0046872
Vium3594g00041 483 SUPERFAMILY CCCH zinc finger 95 118 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3594g00041 Vium-Chr3594 290939 303172 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3594g00041 1 451 C2H2 Transcription Factor Family AT5G18550 56.034 1.62e-152 440
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vium3594g00041 zf-CCCH 9.2e-08 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3594g00041 - - gmx:100812433 776.163