Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3594g00040 ATGGTTACGTTCAGGTTTCATCAGTACCAGGTCGTTGGGAGGGCTCTCCCAACGGAAGCAGATCAGCACCCTAAGATTTACCGCATGAAGCTTTGGGCTACCAACGAGGTTCGCGCAAAATCTAAGTTCTGGTATTTTTTGAGGAAGCTCAAGAAAGTGAAGAAGAGCAATGGTCAAATGCTCGCTATCAATGAGATTTTTGAGAAAAACCCAACTAAAATTAAGAACTATGGGATATGGTTGAGGTATCAGAGTAGGACCGGTTACCACAACATGTATAAGGAGTACCGTGATACAACTCTAAATGGCGCAGTTGAGCAGATGTACAATGAGATGGCATCTCGTCACAGGGTGAGGTGCCCATGCATCCAAATTATTAAGACCGCTACCATCCCGGCTAAGCTTTGCAAGAGGGAGAGCACCAAACAATTCCACAACTCCAAAATCAAGTTCCCATTGGTCTTCAAGAAAGTTAGGCCACCATCTAGGAAGCTGAAGACCACATACAAGGCCAAGAAGCCCAACTTGTTTATGTAA 537 0.4469 MVTFRFHQYQVVGRALPTEADQHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYNEMASRHRVRCPCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFKKVRPPSRKLKTTYKAKKPNLFM 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3594g00040 178 PANTHER 60S RIBOSOMAL PROTEIN L18A 3 177 IPR028877 -
Vium3594g00040 178 Gene3D - 1 70 - -
Vium3594g00040 178 FunFam 60S ribosomal protein L18a 1 71 - -
Vium3594g00040 178 FunFam 60S ribosomal protein L18a 72 147 - -
Vium3594g00040 178 PIRSF Ribosomal_L18a 1 178 IPR021138 GO:0003735|GO:0005840|GO:0006412
Vium3594g00040 178 Gene3D - 71 144 - -
Vium3594g00040 178 Pfam Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A 7 128 IPR023573 GO:0003735|GO:0005840|GO:0006412
Vium3594g00040 178 SUPERFAMILY RplX-like 71 146 - -
Vium3594g00040 178 Hamap 50S ribosomal protein L18Ae [rpl18a]. 6 69 IPR028877 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3594g00040 Vium-Chr3594 282316 284291 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3594g00040 1 178 Cytoplasmic Ribosomal Protein Gene Family AT2G34480 92.697 4.02e-124 347
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3594g00040 K02882 - jre:108990266 364.385