Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3594g00030 ATGGGAGATTTAGAGAGAATGGGCAGAGAACTCAAATGCCCAATCTGTTGGAGTTTGTTCGATTCTGCGGTTTCGCTCACCTGCAATCATCACTTCTGCAACTCGTGTATTGTAAAGTCCATGAAATCAGCACCTGCTTGTCCTGTATGTAAAATCCCGTTCACTCGTCGAGAGATTCGCCCTGCTCCTCATATGGACAACTTGGTCAATATATATACGAGCATGGAAGTTGCTTCAGGAATCAATATATTTGTTACCCAGAATGTATCTCAAGCTAAATTATCGGATGTGGAAAAGCAATGTGATGGTAGTGCCGACTTTGGCAAAGTGGAAGCTGGTGGATCTCATAAAGGTCATGTGCAAGAGAAGAAAACCCGGAAGATGAAGAAGGCGAAGAAGACAGTCCAGGTCAACATGGAAAGTTCAGGCTCTGGCTTACCAAAACCTTCTTTTCCAGCCAAGAAAAGGGTGCTGGTGCCACAAAATATTCTTTCAGAGACTCCAATGAAAAATTTAAAGCTTGGAGATTGTCTTAGTGAAATTAACAAAGAGAAAGGAGTGCAAAAGGTTCCTCTCATTGGAAGTGAAATGCCTCTACAAAGTGAAAAATCTGTTCCTGTTCTTTCACCTTTCTTTTGGTTGAGAGAGGAAAAGGATGGTGAAAAGTCGAGCCCACCAACTGACGAGGATCAATTTATTGATGGATCAACACCAAATCCTCCTTCATTTAGTGATCTCAGGGACTCGGATGATGAAAACACTTCTAATGTCGCTCCATGCGATGAGGGGCAAAATCAAATCTCTGTTAATTTATTTGATAGTGAGATGTTTGAATGGACACAAAGGCCTTGCTCTCCTGAATTATTTTCAAGTCCCTCTAAAATGCAGCTGCAGGTCATGGATACTTACGAGGATGATGAAAATCAAGATGAATTGGTGGCTGCCTCACAGGAACTGGACGCAAATCTACCCATTACTGATGCTGACAACATGAAATTTGAGAATCCCAAAGGAAATAAAACAGCTGATGCATTACCACCAAATGTTTCTCCTCTAATTAGAAGTTCTGTTGATATAAATGGACAAATAAAGTCTAGGAAAAGGGGAAGGAAGGCTAGGGCAAAAATTAGGCATGAGCAGATTGTCGAACCAAAAAATTCAATTGATGGAATGCATCTTGTTGGACATGTATCACTAGAAGTCACTCAGGAACGAGCATTGGACTGCAAACCCAAATCTTGTAATCTGGGGAAGGCTAGTAGAAGGGGCAAGAAGGTTTGTTTCAATACCAGTTCAGTTCCAACATCTACAAGTGCATGTACAGTCCCTGATTCGTCAGGAGTTTTAAGTATTGATGAAATGGAGATGGTTGCAAATCCATGTATTTCGCCATCTAAACAAGAAAATGAGAAGCATTGTCCTCTGGAGATTGCTGGAAAAAGCCAGAAGATAATATCTGGAAAACAAAATATGAACCCAACCGAAGAGTTTGCTGGTTCTGATTCATCCCTTTTCAGTCTACAGACAAACAGTAATGTGAATACCTCTAAAAGCAAGCAATCCAAAAACATATTTACTAGAAAATCTATATCTGGCAGTAAAAAGTTGAGAAATACTGAAAGGTCAAAGCTTTCTTCTGAATGTACCTCTATCACTAAAAATGCTGAAGAAATTCTACCTAATGAAAGTGTTCATCACTGTCCTCATGTCAGCGATTTGAATGATCCATCAAAAGAGAAACATCGTTCTTTGACTGATAAAACAGTTTTAAGGAAATGTGAGAGCCATGTCGAGAAGTATCAATGTTTTTTCTGTCTCTCATCAGAAGAATCAGAGGTTTCTGGCCCTATGGTGCATTATCTTGATGGCAAACCTGTACCTGCAGATCATGAAGGAGGGTTTAAAGTCACACATTGTCACAGGAACTGCACAGAATGGGCCCCCAATGTATATTTTGACGGTGAAAATGCAATAAATCTTGAAGCTGAGATAAGTAGAAGTCGAAGAATTAAATGTAGTTTTTGTGGACTTAAAGGGGCCGCACTTGGTTGTTATGAGAAAAGTTGTCGCAGGAGCTTTCATGTTCCTTGTGCCAGGTGGACTTCTTTATGTCGTTGGGATACGCAAAACTTCGTCATGTTATGTCCTCTACATGCATCCTCCATGTTGCCCTGTGAAGATTCAGGTTCCCAAAAAAGGAGCAAGAAAGGCAAAGGTAGAGATGGCAAAAACCATGGTCCTAGTCTTGACACTATAAGCCAAACACGGGCTGATCATAGATCTTACAAGAAAATTGTTCTATGTTGTTCTGCTCTATCCGTACAGGAGAAGGACATTGTTTCCAAATTCGAAAGTGTATCTAAAGTTACAATTTTGAAAAATTGGGACTCGAGTGTCACCCATGTTATAGCATCAACGGATGAAAACGGGGCATGCAGAAGAACCCTGAAAGTATTGTTGGGTATCCTGGAGGGAAAGTGGATTGTAAAAGTTGAGTGGATCAAAGCTTGCATGAAGGAAATGAATCCTGTTGGTGAGGAGCGTTATGAAATTAATGTTGACATCCACGGAATTAGGGATGGTCCTCGTCTTGGACGACTAAGAGTATTGAACAAGCAACCAAAGCTTTTTTATGGCTACAAGTTTTATTTTATGGGAGATTTTTTACCTTCATACAAGGGGTATCTGCAAGAACTTGTGGTTGCTGCTGGTGGGATAATTCTGCATAGAAAACCGGTGTCTTGTGACCAAAAGTCAATGCTACCAGATTCACATTCATACCAGAACTTCATAGTTTACAGCCTCGAGCTGCCGGATGAATGTAAGCCTTCAGAAATGGATACAATTTGCAGACAAAGGTGTCATGATGCAGAGGTTGTGGCAAGTTCTACAGGCTCTAAGGTTGTAACTAATACATGGATTCTTAATTCAATTGCAGCCTGCAAACTGCAATGCCTTGCTCAATGA 2967 0.4061 MGDLERMGRELKCPICWSLFDSAVSLTCNHHFCNSCIVKSMKSAPACPVCKIPFTRREIRPAPHMDNLVNIYTSMEVASGINIFVTQNVSQAKLSDVEKQCDGSADFGKVEAGGSHKGHVQEKKTRKMKKAKKTVQVNMESSGSGLPKPSFPAKKRVLVPQNILSETPMKNLKLGDCLSEINKEKGVQKVPLIGSEMPLQSEKSVPVLSPFFWLREEKDGEKSSPPTDEDQFIDGSTPNPPSFSDLRDSDDENTSNVAPCDEGQNQISVNLFDSEMFEWTQRPCSPELFSSPSKMQLQVMDTYEDDENQDELVAASQELDANLPITDADNMKFENPKGNKTADALPPNVSPLIRSSVDINGQIKSRKRGRKARAKIRHEQIVEPKNSIDGMHLVGHVSLEVTQERALDCKPKSCNLGKASRRGKKVCFNTSSVPTSTSACTVPDSSGVLSIDEMEMVANPCISPSKQENEKHCPLEIAGKSQKIISGKQNMNPTEEFAGSDSSLFSLQTNSNVNTSKSKQSKNIFTRKSISGSKKLRNTERSKLSSECTSITKNAEEILPNESVHHCPHVSDLNDPSKEKHRSLTDKTVLRKCESHVEKYQCFFCLSSEESEVSGPMVHYLDGKPVPADHEGGFKVTHCHRNCTEWAPNVYFDGENAINLEAEISRSRRIKCSFCGLKGAALGCYEKSCRRSFHVPCARWTSLCRWDTQNFVMLCPLHASSMLPCEDSGSQKRSKKGKGRDGKNHGPSLDTISQTRADHRSYKKIVLCCSALSVQEKDIVSKFESVSKVTILKNWDSSVTHVIASTDENGACRRTLKVLLGILEGKWIVKVEWIKACMKEMNPVGEERYEINVDIHGIRDGPRLGRLRVLNKQPKLFYGYKFYFMGDFLPSYKGYLQELVVAAGGIILHRKPVSCDQKSMLPDSHSYQNFIVYSLELPDECKPSEMDTICRQRCHDAEVVASSTGSKVVTNTWILNSIAACKLQCLAQ 988
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3594g00030 988 SMART BRCT_7 874 981 IPR001357 -
Vium3594g00030 988 SMART BRCT_7 760 841 IPR001357 -
Vium3594g00030 988 ProSiteProfiles Extended PHD (ePHD) domain profile. 599 719 IPR034732 -
Vium3594g00030 988 Pfam PHD-like zinc-binding domain 640 718 - -
Vium3594g00030 988 ProSiteProfiles BRCT domain profile. 790 851 IPR001357 -
Vium3594g00030 988 MobiDBLite consensus disorder prediction 218 264 - -
Vium3594g00030 988 MobiDBLite consensus disorder prediction 729 745 - -
Vium3594g00030 988 MobiDBLite consensus disorder prediction 560 580 - -
Vium3594g00030 988 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 80 IPR013083 -
Vium3594g00030 988 SUPERFAMILY BRCT domain 765 862 IPR036420 -
Vium3594g00030 988 MobiDBLite consensus disorder prediction 512 532 - -
Vium3594g00030 988 ProSiteProfiles BRCT domain profile. 872 978 IPR001357 -
Vium3594g00030 988 MobiDBLite consensus disorder prediction 724 753 - -
Vium3594g00030 988 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 596 721 IPR013083 -
Vium3594g00030 988 MobiDBLite consensus disorder prediction 229 244 - -
Vium3594g00030 988 FunFam Breast cancer associated RING 1 596 721 - -
Vium3594g00030 988 SUPERFAMILY BRCT domain 874 984 IPR036420 -
Vium3594g00030 988 Gene3D BRCT domain 873 981 IPR036420 -
Vium3594g00030 988 Pfam Zinc finger, C3HC4 type (RING finger) 12 50 - -
Vium3594g00030 988 SMART PHD_3 671 719 IPR001965 -
Vium3594g00030 988 CDD BRCT_Bard1_rpt1 765 840 - -
Vium3594g00030 988 SUPERFAMILY RING/U-box 4 75 - -
Vium3594g00030 988 ProSiteProfiles Zinc finger RING-type profile. 13 51 IPR001841 -
Vium3594g00030 988 PANTHER BREAST CANCER TYPE 1 SUSCEPTIBILITY PROTEIN BRCA1 2 985 IPR031099 GO:0006281|GO:0006974
Vium3594g00030 988 Gene3D BRCT domain 761 867 IPR036420 -
Vium3594g00030 988 FunFam Breast cancer associated RING 1 1 83 - -
Vium3594g00030 988 FunFam Breast cancer type 1 susceptibility protein homolog 762 868 - -
Vium3594g00030 988 Pfam BRCA1 C Terminus (BRCT) domain 791 838 IPR001357 -
Vium3594g00030 988 SMART ring_2 672 718 IPR001841 -
Vium3594g00030 988 SMART ring_2 13 50 IPR001841 -
Vium3594g00030 988 ProSitePatterns Zinc finger RING-type signature. 28 37 IPR017907 -
Vium3594g00030 988 MobiDBLite consensus disorder prediction 512 545 - -
Vium3594g00030 988 MobiDBLite consensus disorder prediction 112 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3594g00030 Vium-Chr3594 177604 182903 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3594g00030 8 63 RAD5 or RAD16-like Gene Family AT5G05130 35.088 5.81e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3594g00030 K10683 - gmx:100804958 1474.14