Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3594g00029 ATGGGAGATTTAGAGAGAATGGGCAGAGAACTCAAATGCCCAATCTGTTGGAGTTTGTTCGATTCTGCGGTTTCGCTCACCTGCAATCATCACTTCTGCAACTCGTGTATTGTAAAGTCCATGAAATCAGCACCTGCTTGTCCTGTATGTAAAATCCCGTTCACTCGTCGAGAGATTCGCCCTGCTCCTCATATGGACAACTTGGTCAATATATATACGAGCATGGAAGTTGCTTCAGGAATCAATATATTTGTTACCCAGAATGTATCTCAAGCTAAATTATCGGATGTGGAAAAGCAATGTGATGGTAGTGCCGACTTTGGCAAAGTGGAAGCTGGTGGATCTCATAAAGGTCATGTGCAAGAGAAGAAAACCCGGAAGATGAAGAAGGCGAAGAAGACAGTCCAGGTCAACATGGAAAGTTCAGGCTCTGGCTTACCAAAACCTTCTTTTCCAGCCAAGAAAAGGGTGCTGGTGCCACAAAATATTCTTTCAGAGACTCCAATGAAAAATTTAAAGCTTGGAGATTGTCTTAGTGAAATTAACAAAGAGAAAGGAGTGCAAAAGGTTCCTCTCATTGGAAGTGAAATGCCTCTACAAAGTGAAAAATCTGTTCCTGTTCTTTCACCTTTCTTTTGGTTGAGAGAGGAAAAGGATGGTGAAAAGTCGAGCCCACCAACTGACGAGGATCAATTTATTGATGGATCAACACCAAATCCTCCTTCATTTAGTGATCTCAGGGACTCGGATGATGAAAACACTTCTAATGTCGCTCCATGCGATGAGGGGCAAAATCAAATCTCTGTTAATTTATTTGATAGTGAGATGTTTGAATGGACACAAAGGCCTTGCTCTCCTGAATTATTTTCAAGTCCCTCTAAAATGCAGGTCATGGATACTTACGAGGATGATGAAAATCAAGATGAATTGGTGGCTGCCTCACAGGAACTGGACGCAAATCTACCCATTACTGATGCTGACAACATGAAATTTGAGAATCCCAAAGGAAATAAAACAGCTGATGCATTACCACCAAATGTTTCTCCTCTAATTAGAAGTTCTGTTGATATAAATGGACAAATAAAGTCTAGGAAAAGGGGAAGGAAGGCTAGGGCAAAAATTAGGCATGAGCAGATTGTCGAACCAAAAAATTCAATTGATGGAATGCATCTTGTTGGACATGTATCACTAGAAGTCACTCAGGAACGAGCATTGGACTGCAAACCCAAATCTTGTAATCTGGGGAAGGCTAGTAGAAGGGGCAAGAAGGTTTGTTTCAATACCAGTTCAGTTCCAACATCTACAAGTGCATGTACAGTCCCTGATTCGTCAGGAGTTTTAAGTATTGATGAAATGGAGATGGTTGCAAATCCATGTATTTCGCCATCTAAACAAGAAAATGAGAAGCATTGTCCTCTGGAGATTGCTGGAAAAAGCCAGAAGATAATATCTGGAAAACAAAATATGAACCCAACCGAAGAGTTTGCTGGTTCTGATTCATCCCTTTTCAGTCTACAGACAAACAGTAATGTGAATACCTCTAAAAGCAAGCAATCCAAAAACATATTTACTAGAAAATCTATATCTGGCAGTAAAAAGTTGAGAAATACTGAAAGGTCAAAGCTTTCTTCTGAATGTACCTCTATCACTAAAAATGCTGAAGAAATTCTACCTAATGAAAGTGTTCATCACTGTCCTCATGTCAGCGATTTGAATGATCCATCAAAAGAGAAACATCGTTCTTTGACTGATAAAACAGTTTTAAGGAAATGTGAGAGCCATGTCGAGAAGTATCAATGTTTTTTCTGTCTCTCATCAGAAGAATCAGAGGTTTCTGGCCCTATGGTGCATTATCTTGATGGCAAACCTGTACCTGCAGATCATGAAGGAGGGTTTAAAGTCACACATTGTCACAGGAACTGCACAGAATGGGCCCCCAATGTATATTTTGACGGTGAAAATGCAATAAATCTTGAAGCTGAGATAAGTAGAAGTCGAAGAATTAAATGTAGTTTTTGTGGACTTAAAGGGGCCGCACTTGGTTGTTATGAGAAAAGTTGTCGCAGGAGCTTTCATGTTCCTTGTGCCAGGTGGACTTCTTTATGTCGTTGGGATACGCAAAACTTCGTCATGTTATGTCCTCTACATGCATCCTCCATGTTGCCCTGTGAAGATTCAGGTTCCCAAAAAAGGAGCAAGAAAGGCAAAGGTAGAGATGGCAAAAACCATGGTCCTAGTCTTGACACTATAAGCCAAACACGGGCTGATCATAGATCTTACAAGAAAATTGTTCTATGTTGTTCTGCTCTATCCGTACAGGAGAAGGACATTGTTTCCAAATTCGAAAGTGTATCTAAAGTTACAATTTTGAAAAATTGGGACTCGAGTGTCACCCATGTTATAGCATCAACGGATGAAAACGGGGCATGCAGAAGAACCCTGAAAGTATTGTTGGGTATCCTGGAGGGAAAGTGGATTGTAAAAGTTGAGTGGATCAAAGCTTGCATGAAGGAAATGAATCCTGTTGGTGAGGAGCGTTATGAAATTAATGTTGACATCCACGGAATTAGGGATGGTCCTCGTCTTGGACGACTAAGAGTATTGAACAAGCAACCAAAGCTTTTTTATGGCTACAAGTTTTATTTTATGGGAGATTTTTTACCTTCATACAAGGGGTATCTGCAAGAACTTGTGGTTGCTGCTGGTGGGATAATTCTGCATAGAAAACCGGTGTCTTGTGACCAAAAGTCAATGCTACCAGATTCACATTCATACCAGAACTTCATAGTTTACAGCCTCGAGCTGCCGGATGAATGTAAGCCTTCAGAAATGGATACAATTTGCAGACAAAGGTGTCATGATGCAGAGGTTGTGGCAAGTTCTACAGGCTCTAAGGTTGTAACTAATACATGGATTCTTAATTCAATTGCAGCCTGCAAACTGCAATGCCTTGCTCAATGA 2961 0.4056 MGDLERMGRELKCPICWSLFDSAVSLTCNHHFCNSCIVKSMKSAPACPVCKIPFTRREIRPAPHMDNLVNIYTSMEVASGINIFVTQNVSQAKLSDVEKQCDGSADFGKVEAGGSHKGHVQEKKTRKMKKAKKTVQVNMESSGSGLPKPSFPAKKRVLVPQNILSETPMKNLKLGDCLSEINKEKGVQKVPLIGSEMPLQSEKSVPVLSPFFWLREEKDGEKSSPPTDEDQFIDGSTPNPPSFSDLRDSDDENTSNVAPCDEGQNQISVNLFDSEMFEWTQRPCSPELFSSPSKMQVMDTYEDDENQDELVAASQELDANLPITDADNMKFENPKGNKTADALPPNVSPLIRSSVDINGQIKSRKRGRKARAKIRHEQIVEPKNSIDGMHLVGHVSLEVTQERALDCKPKSCNLGKASRRGKKVCFNTSSVPTSTSACTVPDSSGVLSIDEMEMVANPCISPSKQENEKHCPLEIAGKSQKIISGKQNMNPTEEFAGSDSSLFSLQTNSNVNTSKSKQSKNIFTRKSISGSKKLRNTERSKLSSECTSITKNAEEILPNESVHHCPHVSDLNDPSKEKHRSLTDKTVLRKCESHVEKYQCFFCLSSEESEVSGPMVHYLDGKPVPADHEGGFKVTHCHRNCTEWAPNVYFDGENAINLEAEISRSRRIKCSFCGLKGAALGCYEKSCRRSFHVPCARWTSLCRWDTQNFVMLCPLHASSMLPCEDSGSQKRSKKGKGRDGKNHGPSLDTISQTRADHRSYKKIVLCCSALSVQEKDIVSKFESVSKVTILKNWDSSVTHVIASTDENGACRRTLKVLLGILEGKWIVKVEWIKACMKEMNPVGEERYEINVDIHGIRDGPRLGRLRVLNKQPKLFYGYKFYFMGDFLPSYKGYLQELVVAAGGIILHRKPVSCDQKSMLPDSHSYQNFIVYSLELPDECKPSEMDTICRQRCHDAEVVASSTGSKVVTNTWILNSIAACKLQCLAQ 986
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3594g00029 986 MobiDBLite consensus disorder prediction 722 751 - -
Vium3594g00029 986 Gene3D BRCT domain 759 865 IPR036420 -
Vium3594g00029 986 MobiDBLite consensus disorder prediction 218 264 - -
Vium3594g00029 986 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 594 719 IPR013083 -
Vium3594g00029 986 ProSiteProfiles BRCT domain profile. 870 976 IPR001357 -
Vium3594g00029 986 MobiDBLite consensus disorder prediction 510 543 - -
Vium3594g00029 986 Pfam PHD-like zinc-binding domain 638 716 - -
Vium3594g00029 986 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 80 IPR013083 -
Vium3594g00029 986 SUPERFAMILY BRCT domain 763 860 IPR036420 -
Vium3594g00029 986 Gene3D BRCT domain 871 979 IPR036420 -
Vium3594g00029 986 MobiDBLite consensus disorder prediction 229 244 - -
Vium3594g00029 986 SUPERFAMILY BRCT domain 872 982 IPR036420 -
Vium3594g00029 986 MobiDBLite consensus disorder prediction 557 578 - -
Vium3594g00029 986 ProSiteProfiles Extended PHD (ePHD) domain profile. 597 717 IPR034732 -
Vium3594g00029 986 FunFam Breast cancer type 1 susceptibility protein homolog 760 866 - -
Vium3594g00029 986 MobiDBLite consensus disorder prediction 510 530 - -
Vium3594g00029 986 PANTHER BREAST CANCER TYPE 1 SUSCEPTIBILITY PROTEIN BRCA1 2 983 IPR031099 GO:0006281|GO:0006974
Vium3594g00029 986 SUPERFAMILY RING/U-box 4 75 - -
Vium3594g00029 986 FunFam Breast cancer associated RING 1 594 719 - -
Vium3594g00029 986 ProSiteProfiles BRCT domain profile. 788 849 IPR001357 -
Vium3594g00029 986 SMART PHD_3 669 717 IPR001965 -
Vium3594g00029 986 SMART ring_2 670 716 IPR001841 -
Vium3594g00029 986 SMART ring_2 13 50 IPR001841 -
Vium3594g00029 986 ProSiteProfiles Zinc finger RING-type profile. 13 51 IPR001841 -
Vium3594g00029 986 FunFam Breast cancer associated RING 1 1 83 - -
Vium3594g00029 986 CDD BRCT_Bard1_rpt1 763 838 - -
Vium3594g00029 986 MobiDBLite consensus disorder prediction 727 743 - -
Vium3594g00029 986 ProSitePatterns Zinc finger RING-type signature. 28 37 IPR017907 -
Vium3594g00029 986 MobiDBLite consensus disorder prediction 112 153 - -
Vium3594g00029 986 Pfam Zinc finger, C3HC4 type (RING finger) 12 50 - -
Vium3594g00029 986 Pfam BRCA1 C Terminus (BRCT) domain 789 836 IPR001357 -
Vium3594g00029 986 SMART BRCT_7 758 839 IPR001357 -
Vium3594g00029 986 SMART BRCT_7 872 979 IPR001357 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3594g00029 Vium-Chr3594 177604 182903 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3594g00029 8 63 RAD5 or RAD16-like Gene Family AT5G05130 35.088 5.84e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3594g00029 K10683 - gmx:100804958 1479.15