Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3594g00025 ATGTTAATTGAGACTGCCTGTGCTCGGGATTCTGGGATGAGTTCAGAGACCGTCAATTCCACGCAACGAACTTCCATGAGCAACGAGAGCGTTTGCAGCACCAGCTTCAGCCGCCTCTCCTTCGACCTCCCTCCTTCCTCCTCATCGCCCGAGAGCCTCTTCGTCAAGCCCCACCGCTCCTCCGACTTCGCTTACTCTGCCATCTTCCGCCGCAAGTCCGCCCTCACCTTCCGCGACTTCCACCTCCTCCGCCGCATCGGCGCTGGCGACATCGGCACCGTGTACCTCTGCCGCCTTCGCCACGACGAGGACGAGTGCTTCTACGCGATGAAGGTGGTGGACAAGGAGGCCGTGGCGCTGAAGAAGAAGGCGCAGAGAGCGGAGATGGAGAGAAAGATTCTGAAGATGGTGGACCACCCCTTCCTCCCTACGCTCTACGCGGAGTTCGAGGCCTCGCATTTCTCTTGCATTGTGATGGAGTATTGCTCCGGTGGAGACTTGCACTCCCTTCGACACAACCACCCTAACAAACGCTTCTCTCTCTCCTCTGCCAGGTTTTACGCGGCTGAAGTACTGGTGGCGTTGGAGTATCTCCACATGCTGGGAATAATCTACAGGGATCTAAAGCCAGAAAACGTGTTGGTCAGATCAGACGGTCACATCATGCTTTCTGATTTCGATCTCTCTCTGTGCTCCCATGCAATCCCCGCCGTTGAATCCCCTGACTCTTCTCTAGATCCTGCATTCACACGCACGTTACCCTACACCCGTCAGTACTCCACTCCCTTCTCCTGTCTCTCCAACCGCGTCTTCCGCTCCAAGAAGGTCCAAACCCTACAACCCAACCGCCTCTTTGTGGCCGAACCGGTTGGGGCTCGCTCCTGCTCCTTCGTGGGGACGCACGAGTACGTCTCACCGGAAGTGGCCTCCGGAAACTCCCACGGCAACGCCGTCGACTGGTGGTCCTTCGGAATATTCATCTTCGAGATGGTGTACGGTCGCACCCCCTTCGCGGGCTCATCGAACGAGGCTACGCTGCGGAACATCATAAAAAACCCCCTCGCCTTTCCCACCGCCACGCCCTCCACCACACTTGAAATGCATGCGCGGGACCTCATCTCCGGGTTGCTCAACAAGGACCCGAACCGCAGGCTTGGGTCGAAGCGCGGCGCCGCCGACGTCAAGAAGCACCCTTTCTTCGCGGGGCTCAATCTGGCGCTCATACGAATGGTGACGCCGCCGGAGGTTCCCTCCCTCAGAAGGCAGAAAACGACGCTGTTTTACCCCGCTAACGATAACGGCAACGTAAATAACAGTAGACACGAGCTAACGGCGTTTGATTACTTTTGA 1350 0.5748 MLIETACARDSGMSSETVNSTQRTSMSNESVCSTSFSRLSFDLPPSSSSPESLFVKPHRSSDFAYSAIFRRKSALTFRDFHLLRRIGAGDIGTVYLCRLRHDEDECFYAMKVVDKEAVALKKKAQRAEMERKILKMVDHPFLPTLYAEFEASHFSCIVMEYCSGGDLHSLRHNHPNKRFSLSSARFYAAEVLVALEYLHMLGIIYRDLKPENVLVRSDGHIMLSDFDLSLCSHAIPAVESPDSSLDPAFTRTLPYTRQYSTPFSCLSNRVFRSKKVQTLQPNRLFVAEPVGARSCSFVGTHEYVSPEVASGNSHGNAVDWWSFGIFIFEMVYGRTPFAGSSNEATLRNIIKNPLAFPTATPSTTLEMHARDLISGLLNKDPNRRLGSKRGAADVKKHPFFAGLNLALIRMVTPPEVPSLRRQKTTLFYPANDNGNVNNSRHELTAFDYF 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3594g00025 449 PANTHER FLIPPASE KINASE 1-RELATED 19 419 - -
Vium3594g00025 449 SMART serkin_6 80 400 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3594g00025 449 Gene3D Transferase(Phosphotransferase) domain 1 293 418 - -
Vium3594g00025 449 MobiDBLite consensus disorder prediction 1 26 - -
Vium3594g00025 449 Pfam Protein kinase domain 80 230 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3594g00025 449 Pfam Protein kinase domain 295 400 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3594g00025 449 ProSitePatterns Serine/Threonine protein kinases active-site signature. 203 215 IPR008271 GO:0004672|GO:0006468
Vium3594g00025 449 ProSiteProfiles Protein kinase domain profile. 80 400 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3594g00025 449 FunFam protein kinase PINOID 162 230 - -
Vium3594g00025 449 MobiDBLite consensus disorder prediction 10 26 - -
Vium3594g00025 449 Gene3D Phosphorylase Kinase; domain 1 78 161 - -
Vium3594g00025 449 FunFam protein kinase PINOID 2 78 161 - -
Vium3594g00025 449 SUPERFAMILY Protein kinase-like (PK-like) 60 422 IPR011009 -
Vium3594g00025 449 Gene3D Transferase(Phosphotransferase) domain 1 162 230 - -
Vium3594g00025 449 FunFam serine/threonine-protein kinase D6PK-like 292 418 - -
Vium3594g00025 449 Coils Coil 110 130 - -
Vium3594g00025 449 CDD STKc_phototropin_like 78 421 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3594g00025 Vium-Chr3594 158365 160912 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3594g00025 10 449 AGC Kinase Gene Family AT2G34650 67.489 0.0 588
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Vium3594g00025 Pkinase 8.9e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3594g00025 - - gmx:100795536 785.023