Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3594g00024 ATGGCTTTTGAGCCATTGGATTGGTATTGTCGGCCAGTTTCAAATGGAGTATGGAGTAAAGCAGTGGAGAATAGCTTTGGTGCTTACACCCCTTGTGCGGTTGATTCTCTTGTCATCTCCATTTCTTATTTGATACTTCTAGGCCTGTGCATATACCGCATTTGGTTGATTAACAAGGATTTCAAGGTGAAGAGGTTCCGTTTAAGGTCCAATATTTACAATTATGTCCTGGGATTGTTATCTCTATATTGTGTGGCGGAGCCATTATACAGATTGATCATGGGAGTATCAGTTCTAAATCTAGATGGCCAGACTCAATTTGCTCCATTTGAGATAGTTTCACTGATCATTGAGGCTCTTGCGTGGTTCTCTATGCTAATTTTGATTGGGGTTGAAACTAAAGTCTACATCCGAGAATCCCGATGGTTTGTCAGATTTAGTGTGATTTATGCTATTGTAGCGGATGCTGTAATGTTCAATCTCATCATTTCTCTGAAGGAGTTCTATAGCAGCTCTGTGTTCTATTTGTACATCAGTGAGGTGGTTGCTCAGGTTTTGTTTGGAGTACTTTTGCTTGTGTATCTTCCTACTTTGGATCCTTATCCGGGTTATACGCCCATTGGGAGTGACATGATCGTTGAAGTTGCATATGATGAACTTCCTGGAGGAGATATGATATGTCCCGAGAGGAGTGCCAACATATTTTCAAGAATAATGTTTTCTTGGTTGAATCCCCTCATGAAACTAGGATATGAAAGACCACTGAATGAGAGAGATATATGGAAATTAGATACATGGGAACGGACAGATACACTAATCAATAAGTTCCAGAAATGCTGGGCTGAGGAATCTCGGAAGCCAAAACCGTGGCTTTTAAGAGCATTAAATGCAAGCCTTGGAGGAAGGTTTTGGTGGGGAGGCTTTTGCAAGATTGGCAATGATATTTCCCAATTTTTGGGCCCACTTATATTGAATCAGCTGCTACAGGCTATGCAAAATGGTGATCCGTCCTGGACTGGCTATGTTTATGCCTTCTCAATATTTGTTGGAGTGGTCTTTGGCGTGTTATGTGAAGCTCAATATTTTCAGAATGTTATGCGTGTTGGTTTCAGGTTAAGATCAACATTGGTGGCTGCTGTATTTCGCAAGTCTCTAAGACTTACTCATGAAGCACGAAAGCAATTTGCAACTGGAAAAATAACCAACTTGATGACTACTGACTGTGAGGCTCTTCAGCAAATATGCCAGTCACTTCACACTTTGTGGTCGGCTCCGGTTCGAATTGTTGTTGCTTTGATTCTTCTTTACCAACAACTCGGTGTTGCTTCCCTTCTTGGTGCCTTGCTGCTAGTTCTTATGTTTCCGTTACAGACATTTATCATCAGTAGAATGCAGAAGTTTTCTAAGGAGGGATTACAACGTACAGACAAAAGAATTGGTCTTATGAATGAAATCTTAGCTGCCATGGACACTGTAAAGTATTATGCATGGGAGAGTAGTTTCCAGTCTAAAGTACAGATCGTCAGAAATGATGAATTATCATGGTTTCGTAAAGCATCATTACTTGGAGCGTGCAATGGATTTATACTGAATAGCATTCCAGTTTTTGTAACTGTGATTACTTTTGGAGTCTTCACCATGCTTGGAGGGGATCTGACTCCTGCTAGAGCTTTTACATCACTTTCTCTGTTTGCTGTGCTCCGATTTCCTCTTTTCATGCTTCCTAATACTATAACTCAGGTGGTTAATGCAAATGTATCTTTGAAACGACTGGAAGATTTGCTCTTAGCAGAAGAGAGAATACTTCTACCAAATCCACCTCTTGATCCAATTTTACCAGCTGTCTCAATCAAGAACGGATACTTTTCTTGGGATGCAAAGGCAGAGCGTCCTACATTGTCAAACATAAATTTGGAAATACCTGTTGGCTGTCTAGTTGCAGTTGTTGGCAGTACAGGTGAAGGAAAGACATCGTTAGTGTCTGCAATGCTTGGAGAAATGCCTCCAAGTGGAGATTCAACCGTTGTTTTGAGAGGAACAGTTGCTTATGTACCCCAAGTTTCATGGATTTTTAATGCAACTGTACGGGATAATGTTTTGTTTGGTTCTGTCTTTGACACAACAAGATATCAAAGGGCAATAAATGTGACCGAACTGCAACATGACGTTGAGTTACTTCCTGGTGGTGATCTTACTGAAATTGGGGAAAGAGGGGTAAACATCAGTGGTGGCCAAAAGCAGAGAGTTTCCATGGCTAGAGCTGTGTACTCCAATTCTGATGTGTACGTCTTTGATGACCCCCTAAGTGCTCTGGATGCGCATGTTGCTAGACAGGTTTTTGATAAATGCATCAAGGGAGAATTGAGAGGGAAGACCCGAGTTCTTGTTACGAATCAGCTGCATTTCCTTTCACAGGTTGATAGAATCATTTTGGTCCATGAAGGTATGGTGAAGGAGGAGGGAACTTTTGAGGAACTCTCGAACCATGGACCGCTGTTCCAGAAGCTTATGGAAAATGCAGGAAAGATGGAGGAGTATGAAGAAGAAATTGTAGATACTGAAACAACAGATCAGAAGGCCTCTTCAAAATCAGTGGCCAATGGAGAAGTTGATGGTTTTGCAAAGAGTGGAAGTAAACCTAAAGAAGGAAAATCAGTCCTTATTAAACAAGAAGAACGGGAAACAGGGGTAGTCAGCTTGGGTGTTCTAATCAGGTACAAGAATGCATTAGGAGGGTTTTGGGTGGTTCTGATACTATTTGGATGCTATATAGCTACAGAAACATTGCGGATATCAAGTAGCACATGGTTAAGCCATTGGACTGATCAAAGTGGTACAGAGGGTTACAACCCTGCCTTCTACAATATGATATATGCAGCTCTATCATTTGGTCAGGTTTTGGTGACTTTAACAAATTCTTACTGGTTAATCATATCAAGTCTTTATGCGGCCAGAAGGTTGCACGAAGCCATGCTTAGCTCCATATTACGGGCTCCGATGGTGTTTTTCCAAACAAATCCACTTGGAAGAGTTATCAACAGGTTTGCAAAGGATCTAGGTGACCTTGATCGGAATGTAGCTCCATTTGTAAATATGTTTCTAGGTCAAGTGTCCCAGCTTCTTTCAACCTTCATCCTCATAGGAATTGTCAGCACAATGTCCTTGTGGGCAATACTGCCATTGTTGGTGTTGTTTTACGTAGCTTATCTATATTATCAGAGCACTGCTCGTGAAGTGAAGCGCTTAGATTCGATTAGCAGATCTCCTGTTTATGCACAGTTTGGAGAAGCATTGAATGGCTTATCAACAATTCGTGCTTACAAAGCATATGATCGTATGGCCGATATAAATGGGAAAGCCATGGACAACAACATTCGATTCACATTGGTGAACATAAGCGGAAACAGATGGCTAGCAATCCGATTGGAAACCTTGGGAGGCCTCATGATATGGTTTACTGCAACCTTTGCTGTCATGCAGAATGGTAGAGCGGAAAACCAGCAAGTATTCGCATCCACCATGGGATTGTTACTTAGCTATGCTCTGAACATTACTACTTTGCTTACCAGTGTGTTGAGGCTTGCAAGTTTGGCTGAGAATAGTTTAAATGCAGTTGAACGGATTGGCACTTACATAGATTTGCCTTCTGAGGCTCCCTCTATAATTGATGATAATCGCCCTCCTCCTGGCTGGCCTTCTTCAGGCTCAATAAGATTTGAAGATGTTGTTCTTCGCTATCGACCTGAACTGCCTCCTGTGTTGCATGGCTTGTCTTTCACCATTTTCCCAAGTGATAAGGTTGGCATTGTTGGGAGGACAGGTGCAGGAAAATCAAGCATGCTTAATGCATTGTTTCGAATTGTGGAATTGGAACGAGGAAGAATATTGATAGATGATTATGATGTTGCAAAGTTTGGGCTTGCTGATTTGCGTAATGTTCTGGGCATTATACCACAAGCTCCAGTTCTCTTTTCAGGAACTGTGAGATTTAATCTGGATCCTTTTAATGAACACAATGATGCTGATCTCTGGGAGGCTCTGGAGAGGGCACATTTGAAGGATGTGATACGGAGGAATTCTTTGGGGCTGGATGCTGAGGTATCCGAGGCAGGAGAGAACTTCAGTGTTGGACAAAGGCAACTTTTGAGTCTTTCCCGGGCTTTATTGCGTAGATCAAAGATATTAGTACTTGACGAAGCAACTGCAGCAGTTGATGTTAGAACAGATGCACTCATACAAAAAACAATCCGAGAGGAATTCAAATCCTGTACAATGCTCATTATTGCTCATCGCCTTAACACTATTATTGATTGTGATCGGATTCTCTTGCTTGGTGGTGGTAAGGTTCTTGAATATGATACCCCTGAGGAGCTGCTGTCAAATGAAGGCAGTTCTTTCTCGAAGATGGTCCAAAGCACAGGAGCTGCAAATGCACAATATTTGCGCAGCTTAGCACTTGGTGGGGATAAATCTGAAAGAGAAGAAAATAGGAATCTAGATGGACAGAGAAAATGGCTGGCTTCTTCACGGTGGGCTGCAGCTGCCCAATTTGCTCTCGCAGTTAGTCTCACCTCATCCCATAATGACCTACAACGGTTGGAAGTGGAAGACGACAATAGTATTTTGAAGAAGACGAAGGATGCCCTGATAACTTTGCAGGGGGTTTTGGAAAGGAAGCATGATAAAGAAATTGAGGAATCTTTAGAGCAGCGTCAAATATCCCCCGAGGGATGGTGGTCATCTCTCTTTAAAATGATTGAAGGTATTGCTATGATGAGCAGATTGGCCAGGAACAGGCTCCATCAAGCAGACTTTGGTTTCGAGGACAGATCAATTAACTTCGATGAAATTGATATGTAG 4860 0.4198 MAFEPLDWYCRPVSNGVWSKAVENSFGAYTPCAVDSLVISISYLILLGLCIYRIWLINKDFKVKRFRLRSNIYNYVLGLLSLYCVAEPLYRLIMGVSVLNLDGQTQFAPFEIVSLIIEALAWFSMLILIGVETKVYIRESRWFVRFSVIYAIVADAVMFNLIISLKEFYSSSVFYLYISEVVAQVLFGVLLLVYLPTLDPYPGYTPIGSDMIVEVAYDELPGGDMICPERSANIFSRIMFSWLNPLMKLGYERPLNERDIWKLDTWERTDTLINKFQKCWAEESRKPKPWLLRALNASLGGRFWWGGFCKIGNDISQFLGPLILNQLLQAMQNGDPSWTGYVYAFSIFVGVVFGVLCEAQYFQNVMRVGFRLRSTLVAAVFRKSLRLTHEARKQFATGKITNLMTTDCEALQQICQSLHTLWSAPVRIVVALILLYQQLGVASLLGALLLVLMFPLQTFIISRMQKFSKEGLQRTDKRIGLMNEILAAMDTVKYYAWESSFQSKVQIVRNDELSWFRKASLLGACNGFILNSIPVFVTVITFGVFTMLGGDLTPARAFTSLSLFAVLRFPLFMLPNTITQVVNANVSLKRLEDLLLAEERILLPNPPLDPILPAVSIKNGYFSWDAKAERPTLSNINLEIPVGCLVAVVGSTGEGKTSLVSAMLGEMPPSGDSTVVLRGTVAYVPQVSWIFNATVRDNVLFGSVFDTTRYQRAINVTELQHDVELLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYVFDDPLSALDAHVARQVFDKCIKGELRGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEELSNHGPLFQKLMENAGKMEEYEEEIVDTETTDQKASSKSVANGEVDGFAKSGSKPKEGKSVLIKQEERETGVVSLGVLIRYKNALGGFWVVLILFGCYIATETLRISSSTWLSHWTDQSGTEGYNPAFYNMIYAALSFGQVLVTLTNSYWLIISSLYAARRLHEAMLSSILRAPMVFFQTNPLGRVINRFAKDLGDLDRNVAPFVNMFLGQVSQLLSTFILIGIVSTMSLWAILPLLVLFYVAYLYYQSTAREVKRLDSISRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKAMDNNIRFTLVNISGNRWLAIRLETLGGLMIWFTATFAVMQNGRAENQQVFASTMGLLLSYALNITTLLTSVLRLASLAENSLNAVERIGTYIDLPSEAPSIIDDNRPPPGWPSSGSIRFEDVVLRYRPELPPVLHGLSFTIFPSDKVGIVGRTGAGKSSMLNALFRIVELERGRILIDDYDVAKFGLADLRNVLGIIPQAPVLFSGTVRFNLDPFNEHNDADLWEALERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLGGGKVLEYDTPEELLSNEGSSFSKMVQSTGAANAQYLRSLALGGDKSEREENRNLDGQRKWLASSRWAAAAQFALAVSLTSSHNDLQRLEVEDDNSILKKTKDALITLQGVLERKHDKEIEESLEQRQISPEGWWSSLFKMIEGIAMMSRLARNRLHQADFGFEDRSINFDEIDM 1619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3594g00024 1619 Gene3D - 611 866 IPR027417 -
Vium3594g00024 1619 SMART AAA_5 642 820 IPR003593 GO:0016887
Vium3594g00024 1619 SMART AAA_5 1263 1456 IPR003593 GO:0016887
Vium3594g00024 1619 Pfam ABC transporter 1254 1402 IPR003439 GO:0005524
Vium3594g00024 1619 CDD ABC_6TM_ABCC_D2 916 1212 IPR044726 GO:0140359
Vium3594g00024 1619 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1227 1463 IPR027417 -
Vium3594g00024 1619 FunFam ABC transporter C family member 2 609 855 - -
Vium3594g00024 1619 Gene3D - 1220 1473 IPR027417 -
Vium3594g00024 1619 ProSitePatterns ABC transporters family signature. 741 755 IPR017871 GO:0005524|GO:0016887
Vium3594g00024 1619 CDD ABCC_MRP_domain1 615 815 - -
Vium3594g00024 1619 Coils Coil 843 863 - -
Vium3594g00024 1619 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 304 583 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vium3594g00024 1619 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 229 1477 - -
Vium3594g00024 1619 SUPERFAMILY ABC transporter transmembrane region 914 1217 IPR036640 GO:0005524|GO:0016020
Vium3594g00024 1619 SUPERFAMILY ABC transporter transmembrane region 286 591 IPR036640 GO:0005524|GO:0016020
Vium3594g00024 1619 CDD ABC_6TM_ABCC_D1 305 591 IPR044746 GO:0140359
Vium3594g00024 1619 FunFam Multidrug resistance-associated protein member 4 1221 1473 - -
Vium3594g00024 1619 FunFam ABC transporter C family member 2 279 600 - -
Vium3594g00024 1619 Pfam ABC transporter 633 768 IPR003439 GO:0005524
Vium3594g00024 1619 FunFam ABC transporter C family member 2 880 1218 - -
Vium3594g00024 1619 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 917 1200 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vium3594g00024 1619 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 615 839 IPR003439 GO:0005524
Vium3594g00024 1619 Pfam ABC transporter transmembrane region 916 1174 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vium3594g00024 1619 Pfam ABC transporter transmembrane region 306 571 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vium3594g00024 1619 Gene3D ABC transporter type 1, transmembrane domain 880 1218 IPR036640 GO:0005524|GO:0016020
Vium3594g00024 1619 Gene3D ABC transporter type 1, transmembrane domain 275 601 IPR036640 GO:0005524|GO:0016020
Vium3594g00024 1619 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 610 838 IPR027417 -
Vium3594g00024 1619 CDD ABCC_MRP_domain2 1235 1455 - -
Vium3594g00024 1619 ProSitePatterns ABC transporters family signature. 1374 1388 IPR017871 GO:0005524|GO:0016887
Vium3594g00024 1619 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1237 1471 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3594g00024 Vium-Chr3594 123978 146260 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3594g00024 605 831 Calmodulin-binding Proteins AT2G36910 27.917 1.75e-23 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3594g00024 - - gmx:100795004 2906.32