Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3594g00017 ATGGAAGAGGATGAGATTCAAGCACAGGCAGTGTGTAAGTTCCCTAGAGTTGGAAATGGACGGAGCGACCAATACCAAGAGGAGGAAGAAGAGGTAGACATAAGAAGAAGAGGTATTGGTGGTGGCGGCGGCGGCGGTGGAGGAGGAGGAGGAAGTGATGCCAGCACAAACCATTTCCAAAGCAGCTGGCACCACTCTTCGAGAATCATTAGGGTGTCTCGAGCATCTGGTGGCAAAGACAGGCACAGCAAGGTGATGACTTCAAAGGGGTTAAGAGACAGAAGGGTTAGGCTCTCGGTGACCACTGCCATTCAGTTCTACGACCTTCAAGATCGCTTGGGTTATGACCAGCCCAGTAAGGCTGTGGAGTGGTTAATCAATGCTGCTTCAGATGCTATCTCAGAGCTTCCTTCTCTCAACAACCCCTTCCCTGATACCCCTAAGCAGCCAAGTGACGAGAAAAGGCCAACCAGTGGTCAACGTGGGGTTCAACCACAGGCCTTTGATGATGCAGATGGAGACACCAATTTCCTCCACCAGAGCCAAAACCAAAGCCAGAACCTCTCTCTCTCCAAGTCTGCTTGCAGCAGCACTTCCGAGACAAGCAAGGGTTCGGGCTTGTCCCTCTCTAGGTCTGAGATCCGTGTGAACCGTGTGAAGGCAAGGGAGAGGGCAAGGGTAAGAGCTGCAAAAGATAAGGGAAAAGATAGGGACAAGGAGAAGGAGAAAGAGAAAGAAAACGAGTCTGGCATTGCACACCACCACCACCAACACCACAATGTAAACAACCCCAACCATATGTCTCACACTGCTTCCTTCACCGAGCTTCTCACCGGTGGGATTGGGAGCACAGTAACGGTTAATCCCACGACCACAGCAAGTCCTAATGGATCATCTGTTCATCAGATCCATGAAGGTCATGACGAGGCCAATATATTCAACAAGGGAAGACAACAACAACAACAACATTGGTCTTCGACAGTGACACCTATGGACTACTTCAGCCAAGGAGGCCTCTTGGTGGGACCTTCATCATCATCTGCAAGAACTCAACACCAACACCAACACCAACATCAATCTTCTTCAGGACAGTTCCAATTGGGACACGCCCTTCCCATCTCACCATTCAGTGGAGAAAACCACTCGGATCAGATGCAGCATTTTTCGTTCATGCCAGACCACCTTAACATGCCGGCCGTGGTGACTTCTTCTTCTTCTGCTTCTCAACCCAGCGGGGGTGACAATTACAACCTCAACTTCAGCATCTCTTCGGGCCTTGCTGGTTTCAATAGGGGGACCCTTCAGTCCAATTCTCCGTCCTTTTTGCCTCACCTCCAGAGGTTTCAACCTTTAGACGGATCATCCAATCTACCTTTCTTCATCGGAGCTCCCGCTCCTTCTTCTGCTCCTCCAACCATTGACAGCAACAACAATAACAACCACCACCACCTTCAGTTCTCTCCCGTCTTCGATGGCCGCTTGCAACTTTGCTATGGCGACGGAACAAGGCATTCTGACCACAAGGGCAAGGGAAAGAACTAA 1542 0.5039 MEEDEIQAQAVCKFPRVGNGRSDQYQEEEEEVDIRRRGIGGGGGGGGGGGGSDASTNHFQSSWHHSSRIIRVSRASGGKDRHSKVMTSKGLRDRRVRLSVTTAIQFYDLQDRLGYDQPSKAVEWLINAASDAISELPSLNNPFPDTPKQPSDEKRPTSGQRGVQPQAFDDADGDTNFLHQSQNQSQNLSLSKSACSSTSETSKGSGLSLSRSEIRVNRVKARERARVRAAKDKGKDRDKEKEKEKENESGIAHHHHQHHNVNNPNHMSHTASFTELLTGGIGSTVTVNPTTTASPNGSSVHQIHEGHDEANIFNKGRQQQQQHWSSTVTPMDYFSQGGLLVGPSSSSARTQHQHQHQHQSSSGQFQLGHALPISPFSGENHSDQMQHFSFMPDHLNMPAVVTSSSSASQPSGGDNYNLNFSISSGLAGFNRGTLQSNSPSFLPHLQRFQPLDGSSNLPFFIGAPAPSSAPPTIDSNNNNNHHHLQFSPVFDGRLQLCYGDGTRHSDHKGKGKN 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3594g00017 513 ProSiteProfiles TCP domain profile. 78 136 IPR017887 -
Vium3594g00017 513 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 43 375 IPR005333 GO:0003700
Vium3594g00017 513 MobiDBLite consensus disorder prediction 215 255 - -
Vium3594g00017 513 MobiDBLite consensus disorder prediction 22 37 - -
Vium3594g00017 513 MobiDBLite consensus disorder prediction 1 66 - -
Vium3594g00017 513 Pfam TCP family transcription factor 77 233 IPR017887 -
Vium3594g00017 513 MobiDBLite consensus disorder prediction 335 384 - -
Vium3594g00017 513 MobiDBLite consensus disorder prediction 335 368 - -
Vium3594g00017 513 MobiDBLite consensus disorder prediction 175 212 - -
Vium3594g00017 513 MobiDBLite consensus disorder prediction 135 268 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3594g00017 Vium-Chr3594 102630 111300 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3594g00017 56 513 TCP Transcription Factor Family AT4G18390 41.458 1.26e-71 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Vium3594g00017 TCP 2.3e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3594g00017 - - gmx:100787772 700.279