Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3591g00001 ATGACGGAGGAATCAAACAAACCAATGGATGATGCATCAGCACCCAACTGGTTATCTGATTTGGACATGGATGATTACAATTTATTTCCAGATGAGTGTGCCCTGAACTTGAACTTGTTTGATGATCAAGAGTTTCTGCCACAAGACATTGCCAGTGCCCTTGAAGAACAGACACAGAGCCTGCAGCGATCTTTGTCTTCGGAGTGCCCTTCCAAAACTGTGAGCAACTCATCCACCGATGAAACCAGTTTTGACTTTGAGAGACCAGCCAAGTTACTGAAAACGACAAGCAGTAGTTGCTGTAACTCTGACTCATCCACCATCACCAACAACCTCTCGCCAAAACTTTCCCCATCCACATCCTTCTCCTCCTTTCAGTCTCATATTCTGTCTTTTGACAACCCCAACTCCTCCCCTCCCACCACCACCACCACCACCACCCACTTTTACGGCTTTGACTTAAACCCAACGCAGAACGAAATGGTGTCAGTGTCAATGCCCCAATTGACAAAATCACGCTTCCCTGATCAAACGCCAAAAGGGTCCTCAAAAAATCACAACTTTGAAACAAAACCCTCACATGGTAAGAGATCTCCTGCTCACGCTCAGGATCACATCATGGCCGAGAGGAAGCGAAGAGAGAAGCTCAGCCAGAGCTTCATTGCTCTTGCAGCTCTTGTTCCTGGCCTAAAGAAGATGGATAAGGCTTCTGTGTTAGGGGACGCTATCAAATATGTGAAAGATCTTAAAGAGCGTTTGGCAGTGCTTGAAGAGCAGAGCAAGAAAACAAGGGAAGAATCGGCGGTGGTCCTGAACAAGCCAGAGCTCTCTGGCGATGATGATTCTTCTTCATGTGATGAGTGCATTGGTGCTGATAGTGTCAGTGACACTCTGTTTGAGGTGGAATCAAGAGTGTCAGGGAAGGAGATGCTGCTTCGGATCCACTGCCTCAAGCAAAAGGGGCTTCTCGTCAAATTACTGGCCGAGATCCAAAGAAATAACCTACTCGTTATTAATAGCAGCATCTTACCATTCGGTGATTCTATCCTTGACATTACCATAGTTGCTCAGATGGGAGAAAATTACAATTTGACTATGAAGGAACTTGCCAAGAACCTACGCGTTTCGGCAAATAAGGTTGTCTCATAA 1149 0.4595 MTEESNKPMDDASAPNWLSDLDMDDYNLFPDECALNLNLFDDQEFLPQDIASALEEQTQSLQRSLSSECPSKTVSNSSTDETSFDFERPAKLLKTTSSSCCNSDSSTITNNLSPKLSPSTSFSSFQSHILSFDNPNSSPPTTXTTTTTHFYGFDLNPTQNEMVSVSMPQLTKSRFPDQTPKGSSKNHNFETKPSHGKRSPAHAQDHIMAERKRREKLSQSFIALAALVPGLKKMDKASVLGDAIKYVKDLKERLAVLEEQSKKTREESAVVLNKPELSGDDDSSSCDECIGADSVSDTLFEVESRVSGKEMLLRIHCLKQKGLLVKLLAEIQRNNLLVINSSILPFGDSILDITIVAQMGENYNLTMKELAKNLRVSANKVVS 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3591g00001 383 MobiDBLite consensus disorder prediction 61 82 - -
Vium3591g00001 383 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 206 268 IPR036638 GO:0046983
Vium3591g00001 383 MobiDBLite consensus disorder prediction 170 187 - -
Vium3591g00001 383 CDD bHLH_AtNAI1_like 202 274 - -
Vium3591g00001 383 MobiDBLite consensus disorder prediction 1 21 - -
Vium3591g00001 383 SMART finulus 207 256 IPR011598 GO:0046983
Vium3591g00001 383 Pfam Helix-loop-helix DNA-binding domain 205 250 IPR011598 GO:0046983
Vium3591g00001 383 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 201 250 IPR011598 GO:0046983
Vium3591g00001 383 MobiDBLite consensus disorder prediction 170 212 - -
Vium3591g00001 383 Coils Coil 240 267 - -
Vium3591g00001 383 PANTHER BHLH TRANSCRIPTION FACTOR 59 377 - -
Vium3591g00001 383 MobiDBLite consensus disorder prediction 133 153 - -
Vium3591g00001 383 MobiDBLite consensus disorder prediction 188 212 - -
Vium3591g00001 383 Gene3D - 194 268 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3591g00001 Vium-Chr3591 10343 12439 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3591g00001 88 375 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 41.275 4.07e-54 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vium3591g00001 HLH 4.9e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3591g00001 - - var:108333272 671.389