Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3590g00007 ATGATGATAAGATGCTCACTGGTTAGTCTTATTGTAATTTTTTTGCCTTTTTCTTTGGCAGTCAATAGAAGGCTTGACGAGTGGGTTAAGCTTGAACAGCTTGATCTTGATTCAGTGGAGGCGGTTGTTGATGAGAAAGTGGAGGAGAAGGGCGCAACTGGTTTGAAGATGACACGCCACCAAAAGAGGAAGATTGATGAGACACATGTAGAGGGTCACGAGGAGCTTGATGCTGCCAGTTTACGAGAACATGAGGAATTTACAAAAGTGAAAAATATAGCTACTATTGAGCTTGGAAGATATGAGATCGAGACATGGTACTTCTCCCCATTCCCACCAGAATACAATGACTGTTTGAGGCTGTACTTTTGCGAGTTTTGCCTCAATTTCATGAAGCGCAAAGAACAGCTTCAGAGGCATATGAGGAAATGCGATCTGAAGCATCCCCCTGGTGATGAGATATATAGAAGTGGCACACTGTCAATGTTTGAGGTTGATGGAAAGAAGAACAAGGTTTATGGGCAGAATCTTTGTTATTTGGCCAAGTTATTTCTTGATCACAAGACCCTCTATTATGATGTAGATCTGTTTCTGTTTTATGTTTTGTGTGAATGTGATGATCGAGGATGTCACATGGTTGGCTATTTCTCCAAGGAAAAACATTCCGAGGAATCTTACAATTTGGCATGTATCCTCACCCTTCCACCTTACCAAAGGAAAGGCTATGGCAAATTTCTAATTGCTTTCTCATACGAACTGTCGAAGAAGGAGAGCAAAGTTGGGACACCTGAAAGACCCCTTTCAGATCTTGGACTGCTAAGCTACAGAGGATATTGGACCAGGGTTCTCTTGGACATTCTGAAGAAGCACAAGGGGAACATTTCTATCAAGGAACTGAGTGATATGACTGCCATTAAAGCTGAAGATATATTAACAACCCTACAGAGTCTAGAGTTGATTCAATACAGGAAAGGTCAACATGTGATCTGTGCTGATCCCAAAGTGTTGGATCGCCATCTTAAAGCTGCTGGAAGGGGCGGCCTGGAGGTTGATGTTAGCAAATTGATCTGGACTCCTTATAAAGAACAGAGTTGA 1095 0.421 MMIRCSLVSLIVIFLPFSLAVNRRLDEWVKLEQLDLDSVEAVVDEKVEEKGATGLKMTRHQKRKIDETHVEGHEELDAASLREHEEFTKVKNIATIELGRYEIETWYFSPFPPEYNDCLRLYFCEFCLNFMKRKEQLQRHMRKCDLKHPPGDEIYRSGTLSMFEVDGKKNKVYGQNLCYLAKLFLDHKTLYYDVDLFLFYVLCECDDRGCHMVGYFSKEKHSEESYNLACILTLPPYQRKGYGKFLIAFSYELSKKESKVGTPERPLSDLGLLSYRGYWTRVLLDILKKHKGNISIKELSDMTAIKAEDILTTLQSLELIQYRKGQHVICADPKVLDRHLKAAGRGGLEVDVSKLIWTPYKEQS 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3590g00007 364 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 89 360 IPR016181 -
Vium3590g00007 364 ProSiteProfiles MYST-type histone acetyltransferase (HAT) domain profile. 88 359 IPR002717 GO:0004402|GO:0006355|GO:0016573
Vium3590g00007 364 Gene3D - 89 145 - -
Vium3590g00007 364 Gene3D - 147 359 - -
Vium3590g00007 364 Gene3D - 267 347 IPR036388 -
Vium3590g00007 364 FunFam Histone acetyltransferase 87 144 - -
Vium3590g00007 364 Pfam MYST family zinc finger domain 90 144 IPR040706 -
Vium3590g00007 364 PANTHER HISTONE ACETYLTRANSFERASE 19 360 - -
Vium3590g00007 364 FunFam Histone acetyltransferase 267 346 - -
Vium3590g00007 364 SUPERFAMILY Chromo domain-like 22 89 IPR016197 -
Vium3590g00007 364 FunFam Histone acetyltransferase 147 275 - -
Vium3590g00007 364 Gene3D - 19 88 - -
Vium3590g00007 364 Pfam MOZ/SAS family 149 326 IPR002717 GO:0004402|GO:0006355|GO:0016573
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3590g00007 Vium-Chr3590 52828 57871 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3590g00007 22 364 C2H2 Transcription Factor Family AT5G64610 93.294 0.0 676
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3590g00007 K11308 - gmx:100819116 696.041