Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vium3590g00006 | ATGGGTTCGCTTGAAACCCCAACCGGCGGGGAAAACGGTTCCGCTCCTTCCGCCGGCAAAGGCAAATCCATGTCCGTCGACGGCGCGGAGGCGGCGCCGGAGACCGACATGTCGAAGCGGAGGAGATCGTCGGTTCTGCCCCTGGAGGTCGGCACGCGTGTCATGTGCCGGTGGAGGGACAGCAAGTACCATCCCGTGAAGGTCATCGAACGCCGGAAGGTTCACAACGCCATCCCCAGCGATTATGAGTATTACGTCCATTACACCGAGTTCAATAGAAGGCTTGACGAGTGGGTTAAGCTTGAACAGCTTGATCTTGATTCAGTGGAGGCGGTTGTTGATGAGAAAGTGGAGGAGAAGGGCGCAACTGGTTTGAAGATGACACGCCACCAAAAGAGGAAGATTGATGAGACACATGTAGAGGGTCACGAGGAGCTTGATGCTGCCAGTTTACGAGAACATGAGGAATTTACAAAAGTGAAAAATATAGCTACTATTGAGCTTGGAAGATATGAGATCGAGACATGGTACTTCTCCCCATTCCCACCAGAATACAATGACTGTTTGAGGCTGTACTTTTGCGAGTTTTGCCTCAATTTCATGAAGCGCAAAGAACAGCTTCAGAGGCATATGAGGAAATGCGATCTGAAGCATCCCCCTGGTGATGAGATATATAGAAGTGGCACACTGTCAATGTTTGAGGTTGATGGAAAGAAGAACAAGGTTTATGGGCAGAATCTTTGTTATTTGGCCAAGTTATTTCTTGATCACAAGACCCTCTATTATGATGTAGATCTGTTTCTGTTTTATGTTTTGTGTGAATGTGATGATCGAGGATGTCACATGGTTGGCTATTTCTCCAAGGAAAAACATTCCGAGGAATCTTACAATTTGGCATGTATCCTCACCCTTCCACCTTACCAAAGGAAAGGCTATGGCAAATTTCTAATTGCTTTCTCATACGAACTGTCGAAGAAGGAGAGCAAAGTTGGGACACCTGAAAGACCCCTTTCAGATCTTGGACTGCTAAGCTACAGAGGATATTGGACCAGGGTTCTCTTGGACATTCTGAAGAAGCACAAGGGGAACATTTCTATCAAGGAACTGAGTGATATGACTGCCATTAAAGCTGAAGATATATTAACAACCCTACAGAGTCTAGAGTTGATTCAATACAGGAAAGGTCAACATGTGATCTGTGCTGATCCCAAAGTGTTGGATCGCCATCTTAAAGCTGCTGGAAGGGGCGGCCTGGAGGTTGATGTTAGCAAATTGATCTGGACTCCTTATAAAGAACAGAGTTGA | 1305 | 0.4651 | MGSLETPTGGENGSAPSAGKGKSMSVDGAEAAPETDMSKRRRSSVLPLEVGTRVMCRWRDSKYHPVKVIERRKVHNAIPSDYEYYVHYTEFNRRLDEWVKLEQLDLDSVEAVVDEKVEEKGATGLKMTRHQKRKIDETHVEGHEELDAASLREHEEFTKVKNIATIELGRYEIETWYFSPFPPEYNDCLRLYFCEFCLNFMKRKEQLQRHMRKCDLKHPPGDEIYRSGTLSMFEVDGKKNKVYGQNLCYLAKLFLDHKTLYYDVDLFLFYVLCECDDRGCHMVGYFSKEKHSEESYNLACILTLPPYQRKGYGKFLIAFSYELSKKESKVGTPERPLSDLGLLSYRGYWTRVLLDILKKHKGNISIKELSDMTAIKAEDILTTLQSLELIQYRKGQHVICADPKVLDRHLKAAGRGGLEVDVSKLIWTPYKEQS | 434 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vium3590g00006 | 434 | FunFam | Histone acetyltransferase | 217 | 345 | - | - | |
| Vium3590g00006 | 434 | FunFam | Histone acetyltransferase | 38 | 158 | - | - | |
| Vium3590g00006 | 434 | SUPERFAMILY | Acyl-CoA N-acyltransferases (Nat) | 159 | 430 | IPR016181 | - | |
| Vium3590g00006 | 434 | ProSiteProfiles | MYST-type histone acetyltransferase (HAT) domain profile. | 158 | 429 | IPR002717 | GO:0004402|GO:0006355|GO:0016573 | |
| Vium3590g00006 | 434 | Gene3D | - | 159 | 215 | - | - | |
| Vium3590g00006 | 434 | Gene3D | - | 37 | 158 | - | - | |
| Vium3590g00006 | 434 | PANTHER | HISTONE ACETYLTRANSFERASE | 52 | 430 | - | - | |
| Vium3590g00006 | 434 | FunFam | Histone acetyltransferase | 157 | 214 | - | - | |
| Vium3590g00006 | 434 | Gene3D | - | 337 | 417 | IPR036388 | - | |
| Vium3590g00006 | 434 | MobiDBLite | consensus disorder prediction | 1 | 44 | - | - | |
| Vium3590g00006 | 434 | Pfam | RNA binding activity-knot of a chromodomain | 48 | 106 | IPR025995 | - | |
| Vium3590g00006 | 434 | Pfam | MYST family zinc finger domain | 160 | 214 | IPR040706 | - | |
| Vium3590g00006 | 434 | SMART | chromo_7 | 62 | 121 | IPR000953 | - | |
| Vium3590g00006 | 434 | SUPERFAMILY | Chromo domain-like | 42 | 159 | IPR016197 | - | |
| Vium3590g00006 | 434 | Pfam | MOZ/SAS family | 219 | 396 | IPR002717 | GO:0004402|GO:0006355|GO:0016573 | |
| Vium3590g00006 | 434 | CDD | CBD_MOF_like | 51 | 120 | - | - | |
| Vium3590g00006 | 434 | Gene3D | - | 217 | 429 | - | - | |
| Vium3590g00006 | 434 | FunFam | Histone acetyltransferase | 337 | 416 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vium3590g00006 | Vium-Chr3590 | 52828 | 62963 | Dispersed/Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vium3590g00006 | 4 | 434 | C2H2 Transcription Factor Family | AT5G64610 | 85.945 | 0.0 | 782 |