LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vium3590g00003	ATGGCTGAAGTCATCAACATGCCCCCCGAATCTCTCGATCAATCTCCCTCTGCTTCCGCTCCTCCTCAACCCCCTCCACCAGCCACTTCCGCCGCCGAAGATGACCCTCCTCCGCCGCGCCGCCGAGACCGCCGCGACGATCGGGAATTAGACCGCCACCCCAACCGTAGCCGCGATTACTACGACCGCGACAGGGACTTCAAGCGCCGCCGTAGCCCCAGCCCTGGCTACCGCGACCGCCGCTACTCTCCACAGCCGCCATCGCGCCGCTCGCCTCCGCCGTACAAGCGGTCTCGGAGGGGCAGCCCCCGTGGTTATGGAAATGAGGACAGATTTGGGTATGAGTATTTTGGTGGCTATGAACGGGGAGTGGGTGGAAGAACTGGTTATGCGGATGAGAAGTCTTATGGCAGGCTTGCACATCGATCTGTTGGGGGATATCATAATGGGATGTCTGATGTGGATATTAATCGTGGTTATACAGATTTGTCAAGTGGAGGTGCACAAAGAGAGGGGTTGATGTCCTATAAACAATTCATTCAGGAGCTCGAAGATGATGTACTGCCAGCTGAAGCTGAGCGTAGGTATCAAGAATACAAATCGGAGTATATTTCTACCCAAAAACGAGCTTATTTTAATGCTCATAAGGATGAGGAATGGTTAAAAGATAAGTATCATCCAACAAATTTACTAACAGTAATTGAAAGGAGGAATGAAAATGCTCGACGACTTGCAAAGGATTTTATTCTTGACTTGCAGAGTGGAACGTTAGACCTAAATCCTGGTTTGAATTCCTCTTCGTCCAGTAAATCAGGGCATGCCAGTGAACCTAATTCAGAGGAAGAAACAGATGGTGGCATTAAGCGAAGAAGACATGGTAGGGGACCTAATAAAGATAATGATTTCTCAGCTGCACCCAAGGCTCACCCTATCAGTTCTGAACCTAGACGGATACAAGCAGATATTTTAAAAGCTCAGGCTGTTGTTCGTAAGCTTGACATGGAGAAGGGTATTGAAGATAATATCTTATGTACTAGTGACCACAACAGAAATGGTGACAAGTCTCACAGTGGATCTGTGGGCCCCATAATAATAATCCGAGGCTTAACATCTGTTAAGGGCTTAGAGGGTGTTGAGCTATTGGACACACTTATTACATATCTTTGGCGCATTCATGGTATTGATTATTATGGAATGGTTGAGAATAATGAGGCCAAGGGTTTTAGACATGTGAGACCAGAAGGAGCAGGGCATGAAGAAACAAGTAAATCAGGTTCCGAATGGGAGAAAAAACTTGATTCATTTTGGCAAGACAGGTTGAATGGTCAGGATCCAATGGAATTGATGACTGCCAAGGAGAAGATAGATGCTGCTGCAGCTGATGTGTTGGATCCATATGTTAGAAAAATTAGGGATGAGAAATATGGGTGGAAGTATGGTTGTGGAGCTAAGGGCTGCACAAAGCTTTTTCATGCGGCTGAATTTGTGTACAAACATTTGAAGCTAAAACATCCCGAGCTTGTAATGGAACTGACATCAAAATTGCGTGAGGATCTTTATTTTCAAAATTACATGAATGATCCTGATGCTCCTGGTGGAACACCTGTCATGCAGCAACCTCAGAAGGATAGGTCTCTAAAGCGAAGATTAGGAGTTTTGGAGGGCCGATTGAAGGATGACCGTGGTAACCGGCGAGACCAGGACGCGAATGACAAAATGAATGGAGATAATAGTTCCCCATCCAATGAAAGGCAAATGGGAAACCATGATGAAGCAATGTATGATTACGGAGGGCCTGGTGTACCTCCATTTACTTCAGATATGCCCCCTCCTCCGCCAGTTTTGATGCCTGTACCTGGTGCTGGGCCTTTGGGACCCTTTGTCCCTGCTCCACCAGAAGTTGCAATGCAGATGTTAAGGGAGCAAGGAGGACCGTCGTATGATGCCTCAGGAAGGAAGATGCGATCTGGTCCTCATATAGGTGGACCAGGGCCTATAATTGCTGTCCCTCCATCCTTTAGACCAGATCCTCGACGGATGCGAAGCTATCAAGATCTGGATGCCCCTGAAGACGAAGTAACTGTGATAGACTATCGGAGCTTGTAG	2106	0.4729	MAEVINMPPESLDQSPSASAPPQPPPPATSAAEDDPPPPRRRDRRDDRELDRHPNRSRDYYDRDRDFKRRRSPSPGYRDRRYSPQPPSRRSPPPYKRSRRGSPRGYGNEDRFGYEYFGGYERGVGGRTGYADEKSYGRLAHRSVGGYHNGMSDVDINRGYTDLSSGGAQREGLMSYKQFIQELEDDVLPAEAERRYQEYKSEYISTQKRAYFNAHKDEEWLKDKYHPTNLLTVIERRNENARRLAKDFILDLQSGTLDLNPGLNSSSSSKSGHASEPNSEEETDGGIKRRRHGRGPNKDNDFSAAPKAHPISSEPRRIQADILKAQAVVRKLDMEKGIEDNILCTSDHNRNGDKSHSGSVGPIIIIRGLTSVKGLEGVELLDTLITYLWRIHGIDYYGMVENNEAKGFRHVRPEGAGHEETSKSGSEWEKKLDSFWQDRLNGQDPMELMTAKEKIDAAAADVLDPYVRKIRDEKYGWKYGCGAKGCTKLFHAAEFVYKHLKLKHPELVMELTSKLREDLYFQNYMNDPDAPGGTPVMQQPQKDRSLKRRLGVLEGRLKDDRGNRRDQDANDKMNGDNSSPSNERQMGNHDEAMYDYGGPGVPPFTSDMPPPPPVLMPVPGAGPLGPFVPAPPEVAMQMLREQGGPSYDASGRKMRSGPHIGGPGPIIAVPPSFRPDPRRMRSYQDLDAPEDEVTVIDYRSL	701

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vium3590g00003	701	MobiDBLite	consensus disorder prediction	35	77	-	-
	Vium3590g00003	701	MobiDBLite	consensus disorder prediction	542	572	-	-
	Vium3590g00003	701	MobiDBLite	consensus disorder prediction	1	113	-	-
	Vium3590g00003	701	PANTHER	ARSENITE-RESISTANCE PROTEIN 2	40	699	IPR039727	GO:0006397
	Vium3590g00003	701	Pfam	SERRATE/Ars2, N-terminal domain	177	259	IPR021933	-
	Vium3590g00003	701	MobiDBLite	consensus disorder prediction	259	274	-	-
	Vium3590g00003	701	MobiDBLite	consensus disorder prediction	18	34	-	-
	Vium3590g00003	701	ProSitePatterns	Zinc finger C2H2 type domain signature.	481	504	IPR013087	-
	Vium3590g00003	701	MobiDBLite	consensus disorder prediction	526	594	-	-
	Vium3590g00003	701	MobiDBLite	consensus disorder prediction	275	298	-	-
	Vium3590g00003	701	MobiDBLite	consensus disorder prediction	643	682	-	-
	Vium3590g00003	701	Pfam	Arsenite-resistance protein 2	420	595	IPR007042	-
	Vium3590g00003	701	MobiDBLite	consensus disorder prediction	259	317	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vium3590g00003	Vium-Chr3590	36185	44260	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vium3590g00003	77	701	C2H2 Transcription Factor Family	AT2G27100	61.585	0.0	726