Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3590g00002 ATGGCTGAAGTCATCAACATGCCCCCCGAATCTCTCGATCAATCTCCCTCTGCTTCCGCTCCTCCTCAACCCCCTCCACCAGCCACTTCCGCCGCCGAAGATGACCCTCCTCCGCCGCGCCGCCGAGACCGCCGCGACGATCGGGAATTAGACCGCCACCCCAACCGTAGCCGCGATTACTACGACCGCGACAGGGACTTCAAGCGCCGCCGTAGCCCCAGCCCTGGCTACCGCGACCGCCGCTACTCTCCACAGCCGCCATCGCGCCGCTCGCCTCCGCCGTACAAGCGGTCTCGGAGGGGCAGCCCCCGTGGTTATGGAAATGAGGACAGCAGATTTGGGTATGAGTATTTTGGTGGCTATGAACGGGGAGTGGGTGGAAGAACTGGTTATGCGGATGAGAAGTCTTATGGCAGGCTTGCACATCGATCTGTTGGGGGATATCATAATGGGATGTCTGATGTGGATATTAATCGTGGTTATACAGATTTGTCAAGTGGAGGTGCACAAAGAGAGGGGTTGATGTCCTATAAACAATTCATTCAGGAGCTCGAAGATGATGTACTGCCAGCTGAAGCTGAGCGTAGGTATCAAGAATACAAATCGGAGTATATTTCTACCCAAAAACGAGCTTATTTTAATGCTCATAAGGATGAGGAATGGTTAAAAGATAAGTATCATCCAACAAATTTACTAACAGTAATTGAAAGGAGGAATGAAAATGCTCGACGACTTGCAAAGGATTTTATTCTTGACTTGCAGAGTGGAACGTTAGACCTAAATCCTGGTTTGAATTCCTCTTCGTCCAGTAAATCAGGGCATGCCAGTGAACCTAATTCAGAGGAAGAAACAGATGGTGGCATTAAGCGAAGAAGACATGGTAGGGGACCTAATAAAGATAATGATTTCTCAGCTGCACCCAAGGCTCACCCTATCAGTTCTGAACCTAGACGGATACAAGCAGATATTTTAAAAGCTCAGGCTGTTGTTCGTAAGCTTGACATGGAGAAGGGTATTGAAGATAATATCTTATGTACTAGTGACCACAACAGAAATGGTGACAAGTCTCACAGTGGATCTGTGGGCCCCATAATAATAATCCGAGGCTTAACATCTGTTAAGGGCTTAGAGGGTGTTGAGCTATTGGACACACTTATTACATATCTTTGGCGCATTCATGGTATTGATTATTATGGAATGGTTGAGAATAATGAGGCCAAGGGTTTTAGACATGTGAGACCAGAAGGAGCAGGGCATGAAGAAACAAGTAAATCAGGTTCCGAATGGGAGAAAAAACTTGATTCATTTTGGCAAGACAGGTTGAATGGTCAGGATCCAATGGAATTGATGACTGCCAAGGAGAAGATAGATGCTGCTGCAGCTGATGTGTTGGATCCATATGTTAGAAAAATTAGGGATGAGAAATATGGGTGGAAGTATGGTTGTGGAGCTAAGGGCTGCACAAAGCTTTTTCATGCGGCTGAATTTGTGTACAAACATTTGAAGCTAAAACATCCCGAGCTTGTAATGGAACTGACATCAAAATTGCGTGAGGATCTTTATTTTCAAAATTACATGAATGATCCTGATGCTCCTGGTGGAACACCTGTCATGCAGCAACCTCAGAAGGATAGGTCTCTAAAGCGAAGATTAGGAGTTTTGGAGGGCCGATTGAAGGATGACCGTGGTAACCGGCGAGACCAGGACGCGAATGACAAAATGAATGGAGATAATAGTTCCCCATCCAATGAAAGGCAAATGGGAAACCATGATGAAGCAATGTATGATTACGGAGGGCCTGGTGTACCTCCATTTACTTCAGATATGCCCCCTCCTCCGCCAGTTTTGATGCCTGTACCTGGTGCTGGGCCTTTGGGACCCTTTGTCCCTGCTCCACCAGAAGTTGCAATGCAGATGTTAAGGGAGCAAGGAGGACCGTCGTATGATGCCTCAGGAAGGAAGATGCGATCTGGTCCTCATATAGGTGGACCAGGGCCTATAATTGCTGTCCCTCCATCCTTTAGACCAGATCCTCGACGGATGCGAAGCTATCAAGATCTGGATGCCCCTGAAGACGAAGTAACTGTGATAGACTATCGGAGCTTGTAG 2109 0.4732 MAEVINMPPESLDQSPSASAPPQPPPPATSAAEDDPPPPRRRDRRDDRELDRHPNRSRDYYDRDRDFKRRRSPSPGYRDRRYSPQPPSRRSPPPYKRSRRGSPRGYGNEDSRFGYEYFGGYERGVGGRTGYADEKSYGRLAHRSVGGYHNGMSDVDINRGYTDLSSGGAQREGLMSYKQFIQELEDDVLPAEAERRYQEYKSEYISTQKRAYFNAHKDEEWLKDKYHPTNLLTVIERRNENARRLAKDFILDLQSGTLDLNPGLNSSSSSKSGHASEPNSEEETDGGIKRRRHGRGPNKDNDFSAAPKAHPISSEPRRIQADILKAQAVVRKLDMEKGIEDNILCTSDHNRNGDKSHSGSVGPIIIIRGLTSVKGLEGVELLDTLITYLWRIHGIDYYGMVENNEAKGFRHVRPEGAGHEETSKSGSEWEKKLDSFWQDRLNGQDPMELMTAKEKIDAAAADVLDPYVRKIRDEKYGWKYGCGAKGCTKLFHAAEFVYKHLKLKHPELVMELTSKLREDLYFQNYMNDPDAPGGTPVMQQPQKDRSLKRRLGVLEGRLKDDRGNRRDQDANDKMNGDNSSPSNERQMGNHDEAMYDYGGPGVPPFTSDMPPPPPVLMPVPGAGPLGPFVPAPPEVAMQMLREQGGPSYDASGRKMRSGPHIGGPGPIIAVPPSFRPDPRRMRSYQDLDAPEDEVTVIDYRSL 702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3590g00002 702 MobiDBLite consensus disorder prediction 35 77 - -
Vium3590g00002 702 ProSitePatterns Zinc finger C2H2 type domain signature. 482 505 IPR013087 -
Vium3590g00002 702 MobiDBLite consensus disorder prediction 1 111 - -
Vium3590g00002 702 MobiDBLite consensus disorder prediction 260 275 - -
Vium3590g00002 702 Pfam SERRATE/Ars2, N-terminal domain 178 260 IPR021933 -
Vium3590g00002 702 PANTHER ARSENITE-RESISTANCE PROTEIN 2 40 700 IPR039727 GO:0006397
Vium3590g00002 702 MobiDBLite consensus disorder prediction 527 595 - -
Vium3590g00002 702 MobiDBLite consensus disorder prediction 276 299 - -
Vium3590g00002 702 MobiDBLite consensus disorder prediction 644 683 - -
Vium3590g00002 702 MobiDBLite consensus disorder prediction 18 34 - -
Vium3590g00002 702 Pfam Arsenite-resistance protein 2 421 596 IPR007042 -
Vium3590g00002 702 MobiDBLite consensus disorder prediction 260 318 - -
Vium3590g00002 702 MobiDBLite consensus disorder prediction 543 573 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3590g00002 Vium-Chr3590 36185 44261 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3590g00002 77 702 C2H2 Transcription Factor Family AT2G27100 61.585 0.0 730
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3590g00002 K27103 - gmx:100817569 1117.83