Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3589g00012 ATGGCTGTTCCCTTCAAAGCCTCATACCCACTTTTCCTTTGCTTGATTCTTTTCTGTGGCGTCAATTGCACTGAGTTTGAAGTTGGTGGTCATGGAGGTTGGGTTGTCCCGAAGACAAATGATGATGCTCAAATGTTCAATCAATGGGCATCCCAAAACAGATTCAAGATTGACGACAATCTTCTTTTCAAGTACGAGAAAGACTCAGTTATGGAGGTGACTGAAGAAGAATATGAAAAATGTCTATCACCTCATCCCCTCTTTTTCTCCAACAATGGTGATACTGTGTTCAAGTTTGACAGAGCAGGCTTGTTCTACTTCATCAGTGGTGTTCGTGGTCACTGTGACAGAGGGCAGAAGATGATCATCAAGGTCTTGGATATTGAAGCAAGTCCCTCACCCCAATATGCAAATGGCACTGCACCAAAGCCACATTCAAAAAGTGGAGTTGCTGAACTTACTCCCATGAGGATCATGACAGAGTCCACAGTTTTTGTTTTGTCAACCTTCTTCCTTCAGCTTTATGTTTGA 531 0.4275 MAVPFKASYPLFLCLILFCGVNCTEFEVGGHGGWVVPKTNDDAQMFNQWASQNRFKIDDNLLFKYEKDSVMEVTEEEYEKCLSPHPLFFSNNGDTVFKFDRAGLFYFISGVRGHCDRGQKMIIKVLDIEASPSPQYANGTAPKPHSKSGVAELTPMRIMTESTVFVLSTFFLQLYV 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3589g00012 176 Gene3D - 23 130 IPR008972 -
Vium3589g00012 176 FunFam Early nodulin-like protein 1 23 130 - -
Vium3589g00012 176 Pfam Plastocyanin-like domain 42 119 IPR003245 GO:0009055
Vium3589g00012 176 SUPERFAMILY Cupredoxins 23 126 IPR008972 -
Vium3589g00012 176 ProSiteProfiles Phytocyanin domain profile. 24 127 IPR003245 GO:0009055
Vium3589g00012 176 PANTHER BLUE COPPER PROTEIN 24 141 IPR039391 GO:0009055
Vium3589g00012 176 CDD OsENODL1_like 24 126 IPR041846 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3589g00012 Vium-Chr3589 94357 95375 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3589g00012 10 129 Phytocyanin Superfamily AT1G48940 58.333 3.41e-54 168
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3589g00012 - - var:108327897 352.829