Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3589g00011 ATGGCGGAAGCGGAAGACAACCTTCAAGCCTCGCCTATGGACGAAACAAAGAACAATCATAAGAAGAATAAGAAGAAGCGCGAGAAAAAACGACCTCGAGATATTGCTATCGAGGAGCGTCTAGAAGAAGTGGAGAATGTGAATGACGCAGATAGCGACGGAGAATCCTCGAGGAAGAAGAATAAGAAGAAGAAAGTGGAAGGGGAAAGTGAAGTGGAAGAGAGAAAGGTGAAGAACAATGGTGGGTCTGGTATTATGAGCTCCGAGTCATTTGAAACTCTGGGATTGTCTGAACCTACCTATAAGGCCATCATGGATATGGGATTCCAGCACATGACTCAGATTCAAGCGAGAGCGATTCCACCTCTCTTGATTGGAAAAGACGTGCTTGGTGCTGCAAGGACTGGTTCTGGAAAAACTCTGGCCTTCTTAATTCCTGCTGTGGAGCTGTTGTACAATGTTAAGTTTACACCTCGTAACGGAGCTGGTGTTGTTGTTATATGCCCAACAAGAGAGCTTGCAATACAGACACATGCTGTGGCCAAGGAGCTTCTCAAGTATCATTCACAAACTCTTGGGTTGGTTATTGGAGGTTCAACTAGAAAACTTGAAGCTGAACGCCTAGCCAAAGGGATTAATCTATTGGTAGGAACTCCTGGTCGTCTTCTAGATCATCTTCAAAACACAAAAGGATTCATATACAAAAACTTGAAGTGCCTCATGATTGATGAAGCTGACAGAATCTTAGAAGCAAACTTTGAGGAGGAAATGAAACAGATTATTAAGATCCTTCCAAAGAGTAGGCAAACAGCTTTATTTTCCGCTACACAAACAAAGAAGGTCGAGGATCTTGCCCGTTTGTCATTTCAGACTACTCCGGTCTATATTGATGTGGATGACGGGAGAAACAAGGTCACCAACGAAGGGTTGCTTCAGGGTTATGTTGTTGTACCTTGTGCCAAGCGCTTTATTGTTCTCTATTCCTTTTTGAAGAGACACCAGTCAAAAAAAGTGATGGTCTTTTTCTCTTCATGCAACTCTGTCAAATTCCACACAGACATTCTTAATCTCATTCAATTGAATTGCTCAAGTATTCATGGAAAGCAAAAGCAGCAGACCCGGACAACTACCTTTTTTGATTTTTGCAAAGCAGAAAAGGGAATCTTACTATGTACTGATGTTGCTGCTCGTGGACTTGACATACCTGCTGTGGACTGGATTGTGCAGTATGATCCACCTGATGAACCTAAGGAATATATCCACAGGGTCGGTAGAACAGCTCGCGGTGAAGGTGGAAAAGGAAATGCTTTGCTTTTCCTAATTCCTGAAGAATTGCAATTTCTCCGCTACCTGAAGGCAGCTAAGGTCCCTGTTAAAGAGTATGCATATGATGAAAAGAAAGTTGCAAACGTACAATCTCACCTGGAGAATTTGGTTGTCAACAATTTTTATTTGAACAAGATGGCGAAAGAGGCCTATAGATCATACATATTAGCTTATAATTCACATTCCATGAAGGATATATTCAATGTTCACCGTCTTGATTTTCAGGCCGTTGCAACTTCGTTTTGTTTCTCAAATCCACCAAACGTTACACTGAACATAAACAGCAGTAAGCAAAGGAAGAAAATGCGTAAAGTTGATGGAAGTAGACACGGATTCAGCGACAACAATCCTTATGGAAAGAGAAAAGCAGATGACAAGCGGCAGTTTGTGAGGCACTAG 1725 0.4203 MAEAEDNLQASPMDETKNNHKKNKKKREKKRPRDIAIEERLEEVENVNDADSDGESSRKKNKKKKVEGESEVEERKVKNNGGSGIMSSESFETLGLSEPTYKAIMDMGFQHMTQIQARAIPPLLIGKDVLGAARTGSGKTLAFLIPAVELLYNVKFTPRNGAGVVVICPTRELAIQTHAVAKELLKYHSQTLGLVIGGSTRKLEAERLAKGINLLVGTPGRLLDHLQNTKGFIYKNLKCLMIDEADRILEANFEEEMKQIIKILPKSRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRNKVTNEGLLQGYVVVPCAKRFIVLYSFLKRHQSKKVMVFFSSCNSVKFHTDILNLIQLNCSSIHGKQKQQTRTTTFFDFCKAEKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGGKGNALLFLIPEELQFLRYLKAAKVPVKEYAYDEKKVANVQSHLENLVVNNFYLNKMAKEAYRSYILAYNSHSMKDIFNVHRLDFQAVATSFCFSNPPNVTLNINSSKQRKKMRKVDGSRHGFSDNNPYGKRKADDKRQFVRH 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3589g00011 574 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 120 295 IPR014001 -
Vium3589g00011 574 PANTHER RNA HELICASE 30 534 - -
Vium3589g00011 574 CDD DEADc_DDX18 100 297 IPR044773 GO:0003724|GO:0005524
Vium3589g00011 574 SMART DUF4217_3 470 533 IPR025313 -
Vium3589g00011 574 Gene3D - 36 299 IPR027417 -
Vium3589g00011 574 MobiDBLite consensus disorder prediction 549 574 - -
Vium3589g00011 574 Pfam DEAD/DEAH box helicase 113 284 IPR011545 GO:0003676|GO:0005524
Vium3589g00011 574 MobiDBLite consensus disorder prediction 51 78 - -
Vium3589g00011 574 Pfam Domain of unknown function (DUF4217) 471 531 IPR025313 -
Vium3589g00011 574 CDD SF2_C_DEAD 310 440 - -
Vium3589g00011 574 SMART ultradead3 108 313 IPR014001 -
Vium3589g00011 574 SMART helicmild6 349 430 IPR001650 -
Vium3589g00011 574 MobiDBLite consensus disorder prediction 538 574 - -
Vium3589g00011 574 MobiDBLite consensus disorder prediction 1 90 - -
Vium3589g00011 574 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 235 444 IPR027417 -
Vium3589g00011 574 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 89 117 IPR014014 GO:0003724
Vium3589g00011 574 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 85 298 IPR027417 -
Vium3589g00011 574 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 241 249 IPR000629 -
Vium3589g00011 574 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 322 469 IPR001650 -
Vium3589g00011 574 FunFam RNA helicase 306 536 - -
Vium3589g00011 574 Pfam Helicase conserved C-terminal domain 325 429 IPR001650 -
Vium3589g00011 574 Gene3D - 310 550 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3589g00011 Vium-Chr3589 87662 92861 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3589g00011 89 448 Eukaryotic Initiation Factors Gene Family AT3G13920 32.143 2.33e-49 174
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3589g00011 K13179 - gmx:100798885 1029.24