Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3589g00006 ATGACAAAAATTATTAAAGAAATGTTGCCCCCAGATGTACGTGTAGCAAGAGATGCCCAAGATCTATTGATCGAGTGTTGTGTAGAGTTTATAAACCTCATCTCGTCAGAATCCAATGAAGTCTGCAACAGAGAGGAAAAACGGACAATTGCACCTGAGCATGTATTGAAGGCTCTACAGGTTCTTGGATTTGGTGAGTACATTGAAGAAGTTTATGCAGCATATGAACAACACAAAATGGAGACCATGCAGGACTCTTTAAAGGGTGGTAAATGGAGCAATGGAGCTGAGATGACCGAGGAAGAAGCATTAGCAGAGCAGCAAAGGATGTTTGCGGAGGCACGTGCTAGGATGAACGGTGGAGGCATTACTTCCAAGCAGCCAGATACTGACCAAAGTTTAGATAGCTGA 411 0.4331 MTKIIKEMLPPDVRVARDAQDLLIECCVEFINLISSESNEVCNREEKRTIAPEHVLKALQVLGFGEYIEEVYAAYEQHKMETMQDSLKGGKWSNGAEMTEEEALAEQQRMFAEARARMNGGGITSKQPDTDQSLDS 136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3589g00006 136 MobiDBLite consensus disorder prediction 117 136 - -
Vium3589g00006 136 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 2 59 IPR003958 -
Vium3589g00006 136 Gene3D Histone, subunit A 1 121 IPR009072 GO:0046982
Vium3589g00006 136 PANTHER PROTEIN DR1 HOMOLOG 1 135 IPR044255 -
Vium3589g00006 136 SUPERFAMILY Histone-fold 2 121 IPR009072 GO:0046982
Vium3589g00006 136 FunFam Negative cofactor 2 beta 1 122 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3589g00006 Vium-Chr3589 54259 59183 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3589g00006 1 132 CCAAT-DR1 Transcription Factor Family AT5G23090 82.836 2.41e-80 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Vium3589g00006 CBFD_NFYB_HMF 7.7e-19 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3589g00006 K21751 - gmx:100807912 257.684