Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3589g00005 ATGGAGCCTATGGACATAATCGGCAAATCAAAGGAAGACGCTTCGCTTCCTAAAGCAACAATGACAAAAATTATTAAAGAAATGTTGCCCCCAGATGTACGTGTAGCAAGAGATGCCCAAGATCTATTGATCGAGTGTTGTGTAGAGTTTATAAACCTCATCTCGTCAGAATCCAATGAAGTCTGCAACAGAGAGGAAAAACGGACAATTGCACCTGAGCATGTATTGAAGGCTCTACAGGTTCTTGGATTTGGTGAGTACATTGAAGAAGTTTATGCAGCATATGAACAACACAAAATGGAGACCATGGACTCTTTAAAGGGTGGTAAATGGAGCAATGGAGCTGAGATGACCGAGGAAGAAGCATTAGCAGAGCAGCAAAGGATGTTTGCGGAGGCACGTGCTAGGATGAACGGTGGAGGCATTACTTCCAAGCAGCCAGATACTGACCAAAGTTTAGATAGCTGA 468 0.4338 MEPMDIIGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLISSESNEVCNREEKRTIAPEHVLKALQVLGFGEYIEEVYAAYEQHKMETMDSLKGGKWSNGAEMTEEEALAEQQRMFAEARARMNGGGITSKQPDTDQSLDS 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3589g00005 155 PANTHER PROTEIN DR1 HOMOLOG 1 154 IPR044255 -
Vium3589g00005 155 SUPERFAMILY Histone-fold 12 140 IPR009072 GO:0046982
Vium3589g00005 155 Gene3D Histone, subunit A 5 140 IPR009072 GO:0046982
Vium3589g00005 155 FunFam Negative cofactor 2 beta 6 141 - -
Vium3589g00005 155 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 14 79 IPR003958 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3589g00005 Vium-Chr3589 54255 59183 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3589g00005 1 151 CCAAT-DR1 Transcription Factor Family AT5G23090 83.117 3.30e-92 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Vium3589g00005 CBFD_NFYB_HMF 3.2e-22 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3589g00005 K21751 - gmx:100807912 289.271