Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3585g00014 ATGCTGGCAATGGAAGAGGTACTGTGTGAACTCAGTGATCACGAAAAGAGAAACGAGCAAGGTCTGCCACCGGGTTTCAGGTTTCACCCCACTGATGAAGAACTTATAACCTTTTACCTCGCTTCAAAAGTCTTCAATGGCTGCTTCACCACCGTCAAGTTTGCCGAGGTTGATCTCAATAGATGCGAGCCTTGGGAACTTCCAGATGTGGCGAAGATGGGAGAGAGAGAGTGGTATCTGTTCAGCTTGAGGGACAGAAAATACCCTACTGGACTGAGAACAAACAGGGCCACAGGAGCTGGGTACTGGAAAGCCACTGGGAAGGACAAGGAAGTGTTCAGTGCATCAAGTGGAACCCTACTTGGGATGAAGAAGACCCTTGTTTTTTACAAAGGAAGGGCCCCTCGTGGAGAAAAGACCAAATGGGTCATGCATGAGTACCGTTTGGACGGTGACTTTTCCCTTCCTCACCCTCACCCTCATCACGTCTCAAAGGAGGAGTGGGTGATATGCAGGATATTTCATAAATCCGGGGAAAAGAGAACTCCATTGCTCCAAAACCAAGGACAAGGACATTCTGATGCTTCTTCTTCTCCAACAAAAAGTTCTTTACCTCCTTTACTTCCCAGCCCAGCTTCCTTTCCGTTGGAACTACAAGACCAAAATCACCTCTCTCATTCTCACCCTTATCTTTTCCCATTGCATGCATCACCGCAACTCGCTAACACCAGAAACCATCCATCATTTTCTGACCTATTCTTCAAGCCCTCGCCCCTCTCACAGCAACAAAACTGCATCCTCAAGGAAAAAACAGCTCCAAAAGTAATCAAAACGGAGGAGGCTACAGCATTGTATCAGTACCATTTACTTGGTGACAGTGACAACCTGCGGTTAAACCAAAACCTAAGTGATTTCCCAAACCCTTTCGCTGATGTTGAGGTGGATGGTGCTGGGCTGATGGCATTCGCAGGAGGTCCAAATGGTGAAGTTAGGGACATGTCCCCTTCGACAGCCTTCAAAAGGGTGGTAGGGTTGCAGCAGCTCATAGATGCTGCTCATATCGGAATAGATTCTTGGCCCCTGGCCCAGCATGTTTAA 1098 0.4781 MLAMEEVLCELSDHEKRNEQGLPPGFRFHPTDEELITFYLASKVFNGCFTTVKFAEVDLNRCEPWELPDVAKMGEREWYLFSLRDRKYPTGLRTNRATGAGYWKATGKDKEVFSASSGTLLGMKKTLVFYKGRAPRGEKTKWVMHEYRLDGDFSLPHPHPHHVSKEEWVICRIFHKSGEKRTPLLQNQGQGHSDASSSPTKSSLPPLLPSPASFPLELQDQNHLSHSHPYLFPLHASPQLANTRNHPSFSDLFFKPSPLSQQQNCILKEKTAPKVIKTEEATALYQYHLLGDSDNLRLNQNLSDFPNPFADVEVDGAGLMAFAGGPNGEVRDMSPSTAFKRVVGLQQLIDAAHIGIDSWPLAQHV 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3585g00014 365 FunFam NAC domain-containing protein 100-like 31 180 - -
Vium3585g00014 365 Pfam No apical meristem (NAM) protein 23 149 IPR003441 GO:0003677|GO:0006355
Vium3585g00014 365 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 19 241 - -
Vium3585g00014 365 MobiDBLite consensus disorder prediction 183 212 - -
Vium3585g00014 365 Gene3D NAC domain 31 180 IPR036093 GO:0003677|GO:0006355
Vium3585g00014 365 MobiDBLite consensus disorder prediction 183 203 - -
Vium3585g00014 365 SUPERFAMILY NAC domain 17 176 IPR036093 GO:0003677|GO:0006355
Vium3585g00014 365 ProSiteProfiles NAC domain profile. 22 176 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3585g00014 Vium-Chr3585 126698 129293 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3585g00014 1 188 NAC Transcription Factor Family AT1G76420 73.016 4.78e-97 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vium3585g00014 NAM 1.1e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3585g00014 - - gmx:100780313 462.611