Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3585g00013 ATGAGCATGTCGGGATCTGACATGGTGGTAACCAGGGACCAATTCTCGGTTGGGATGCACAACCCTCAATCCCAACCTCAACAACAACAACCTCAACTTCATCAAAACATGCGTATGGACTATGCTGCTGCTGATGGGGCCGCGGTTTTCGGCGCCCCTACCATCAACATCAACAACATCAACGGCGGTGAATCCTCTCCAGTGAGTGTGCCTCCGGGCTTGGGCCTGGGCCATACCCATCCCCAGGGCATGGTGGATAACTCTACTGAGACACTCAAGAGAAAGAGGGGAAGGCCCAGGAAATACGGGCCTGATGGTGGCATGGCTTTGAGCTTGAACACTACCTCTCCTCCTGGTGGGGCCTCGGTACCTGTTGGCCATTCCGGTGGGGCATTTCCGGCGGCTCCTCTCTCTGATTCTGCCTCTGCCGGAACCGGGAAGCGTAGGGGCAGACCTCGTGGTTCTGTTAACAAGAATAAGAAAACCTCAAAGTTTTCTGGGCCAGGAGGTTTCTTTACTCCGCATGTCATTACGGTGAAAGCTGGAGAGGATTTGTCAGCAAGAATTATGTCAATTTCCCAGAGTGGTTCAAGAAATGTTTGCATCTTAAGTGCAAATGGATCCATATCTAATGTGACACTTCGACAGCCTGCATCGTCTGGTGGAACTGTGACTTATGAGGGGCGATTTGAGATCTTATCACTTGGTGGTTCTTTGTTTCTTACTGAAAATGGTTCTCATGGCGGAAGGACTGGAGGCCTGAGTGTGTCCTTGTCAGGGCCAGACGGCCGCGTTTTGGGGGGTGGAGTCGCAGGCCTTTTGGTGGCTGCCTCCCCTGTTCAGATTGTTTTGGCTAGTTTTGTTTCCGATGGCAAGCAATCCAAGTCTGCAAAGCGGATGAGGAATGTATCTGCAGCAGAAAAGGTTGCCACAGCTGGTGGCCAAAGCAGCTCACCATCAAGGGGCACTCTGAGTGAATCTTCAGGTGGGGTCGGGAGTGGGAGCCCACTAAACCAAAGCACAGGAGACTGCATCAACAATATCAACAATATCAACAGCACCACCCCAACGCCAGGCTTTTCAGGCATGCCCTGGAAGTAA 1101 0.5213 MSMSGSDMVVTRDQFSVGMHNPQSQPQQQQPQLHQNMRMDYAAADGAAVFGAPTININNINGGESSPVSVPPGLGLGHTHPQGMVDNSTETLKRKRGRPRKYGPDGGMALSLNTTSPPGGASVPVGHSGGAFPAAPLSDSASAGTGKRRGRPRGSVNKNKKTSKFSGPGGFFTPHVITVKAGEDLSARIMSISQSGSRNVCILSANGSISNVTLRQPASSGGTVTYEGRFEILSLGGSLFLTENGSHGGRTGGLSVSLSGPDGRVLGGGVAGLLVAASPVQIVLASFVSDGKQSKSAKRMRNVSAAEKVATAGGQSSSPSRGTLSESSGGVGSGSPLNQSTGDCINNINNINSTTPTPGFSGMPWK 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3585g00013 366 SMART AT_hook_2 93 105 IPR017956 GO:0003677
Vium3585g00013 366 SMART AT_hook_2 146 158 IPR017956 GO:0003677
Vium3585g00013 366 MobiDBLite consensus disorder prediction 309 360 - -
Vium3585g00013 366 CDD DUF296 173 287 IPR005175 -
Vium3585g00013 366 MobiDBLite consensus disorder prediction 78 169 - -
Vium3585g00013 366 ProSiteProfiles PPC domain profile profile. 169 311 IPR005175 -
Vium3585g00013 366 Pfam Plants and Prokaryotes Conserved (PCC) domain 174 288 IPR005175 -
Vium3585g00013 366 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 38 347 IPR039605 GO:0003680
Vium3585g00013 366 SUPERFAMILY AF0104/ALDC/Ptd012-like 171 289 - -
Vium3585g00013 366 MobiDBLite consensus disorder prediction 308 366 - -
Vium3585g00013 366 Gene3D - 174 304 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3585g00013 Vium-Chr3585 105645 109441 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3585g00013 83 366 AT-hook Motif Nuclear Localized (AHL) Family AT2G33620 51.351 6.44e-78 241
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3585g00013 - - pvu:PHAVU_009G008300g 559.296