Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3585g00008 ATGGCGTACCAAGCGATCCAGGGTCCGAGTTCGGGATCGAGTTCGAGTTCGGGGTTTCAGCTACTCAATTCTCCTTTCGGAGACACCACTTACACCAAAGTCTTCGTCGGAGGGTTGGCCTGGGAGACTCAGAGCGAAACCATGCGCCGCTACTTCGAGCAGTTCGGCGAGATTCTCGAGGCCGTCGTCATCACCGATAAGAACACAGGGCGATCCAAGGGCTATGGTTTCGTGACTTTCCGGGATCCCGAGGCTGCAAGGAGAGCCTGTGCTGATCCAACTCCTGTTATTGATGGTAGAAGGGCGAACTGTAATCTAGCTTCACTTGGTCGACCACGACCCCCTTTGCCTTATGGACGGGTAAGACCTGCCTCCCCTTATGTTGGAAGTGTGCAAACACCTCGCGGTGGCTATGTTGGAGGCTTTGGGTACCAGCAACCGCTTTCTTACATCTATCAACAAGGATTAGTTTACCCTCCATATGGGTATACGGCATATGGACCAGAGTACATCTACCCACAGAGTCTGTATAACCCATATATGGGGCAACAGTACCTTCAGTTATATGGAGTGCCTGGAACAGTGAATACAACTATTTACCCCTATGGACAATTGGGTCAGGCTGTACCTAGTGGTCATGGTTATTCGGCAATGCAGGGTTATACAGTACCAGGTCATCAGATTGTGCCCTATGGGGGATCTAATGTTAATGCCATAACAACTTCACCTATGCCTGCCATTCAAGCCTCATTTCCCAGTGGAATTGCTGCACCGGTTCCTGGCCAACCGCAATTTATTGTTCCTGCTCCTTCTCCTCAGTTCATGCAAGGTGGTGGTCCTGACCAAACAGCTGGGTGA 858 0.5093 MAYQAIQGPSSGSSSSSGFQLLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAARRACADPTPVIDGRRANCNLASLGRPRPPLPYGRVRPASPYVGSVQTPRGGYVGGFGYQQPLSYIYQQGLVYPPYGYTAYGPEYIYPQSLYNPYMGQQYLQLYGVPGTVNTTIYPYGQLGQAVPSGHGYSAMQGYTVPGHQIVPYGGSNVNAITTSPMPAIQASFPSGIAAPVPGQPQFIVPAPSPQFMQGGGPDQTAG 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3585g00008 285 Gene3D - 4 117 IPR012677 -
Vium3585g00008 285 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 26 113 - -
Vium3585g00008 285 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 32 109 IPR000504 GO:0003723
Vium3585g00008 285 SMART rrm1_1 33 105 IPR000504 GO:0003723
Vium3585g00008 285 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 34 90 IPR000504 GO:0003723
Vium3585g00008 285 SUPERFAMILY RNA-binding domain, RBD 31 146 IPR035979 GO:0003676
Vium3585g00008 285 PANTHER BOULE-RELATED 10 250 - -
Vium3585g00008 285 CDD RRM_RBM24_RBM38_like 32 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3585g00008 Vium-Chr3585 79823 84776 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3585g00008 21 108 C2H2 Transcription Factor Family AT2G19380 43.182 3.15e-17 79.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3585g00008 - - gmx:100782606 536.954