Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3585g00004 ATGGAGGATGGTGAGAAACCCACGGGTAATTCCCATGGCATTTCTGATATGGATGTTGTTGATGCGGCTTTGCATGGCCAGCATGTGTCGTCTTCCCCTACTGACAATTCCCCTGCTCAGCAACAGCAGGATCAAGTAATGGTCGAACAGGGCGATGATAACAAAAACGGGGATTCTGATCCTAGTAATGTACCAGAGACTAGTGTAATTAGTGAGAATCAGTTTGAGGTTGAAGATTCCAAGACCGTTTCGCACCATGAACTGATTACTCCTAAGCCTAAAGAAAAGAACATTAGAGAAATGAAGAATGTGCTAAATGATACTGAGATGACTGAGTATGATGAGTATGGCACACCTCTGGACCGTGAAACATTTATGAAAGAGCTTGAGAATTTCTACAGAGAGCGGTCCTTGGAATTTAAGCCTCCTAAGTTTTACGGAGAGCCACTAAATTGCCTTAAGTTGTGGAAAGCTGTTATCAGACTGGGTGGCTATGATGTGGTAACTGGCTCCAAGTTGTGGCGACAAGTAGGAGAGTCTTTCAACCCCCCAAAGACATGCACTACAGTCTCATGGACATTTAGAATCTTTTATGAGAAGGCACTTTTAGAGTATGAAAAGCATAAGAGAGAGACTGGGGAGCTACAGCTCCCTGTTGGAGCATTTCATCAATCTCCAAATGTGGAAAAAGAGACTACTGTTTACCAGGCTCCAGGATCAGGTAGAGCACGAAGGGATGCAGCAGCCCGTGCAATGCAAGGTTGGCATGCTCAGCGCCTTCTTGGATATGGTGAGGTTGCTGAGCCAGCTACTAAGGACAAGAACTTCAGTTCCACACCAAAGCGTGAAAAGAACCTAAAAAGCATTGGTATGATTAATAAACAGAGGACGCCAGCTGGTTTGGAGCATGCTGAGAAAGCTGCAAATATTGAAGGAGATAGACAATTGGTCACAGCAGTGGTGGACATTGGACCCCCAGCCGACTGGGTGAAGATCAACGTACGAGAAACTAAAGATTGTTTTGAGGTGTATGCCCTAGTTCCCGGGCTCCTTCGTGAGGAGGTGCGAGTCCAATCGGATCCAGTTGGACGTCTGGTTATAACTGGTCTGCCAGAACACATTGATAATCCATGGGGAATTACCCCCTTCAAAAAGGTTGTGAACTTACCTGCTAGAATTGATCCTCTTCAGACATCCGCTGTTGTTAGTTTGCATGGTCGACTATTTGTACGGGTTCCCTTTGAGCAGGGAGCTGTATGA 1260 0.4571 MEDGEKPTGNSHGISDMDVVDAALHGQHVSSSPTDNSPAQQQQDQVMVEQGDDNKNGDSDPSNVPETSVISENQFEVEDSKTVSHHELITPKPKEKNIREMKNVLNDTEMTEYDEYGTPLDRETFMKELENFYRERSLEFKPPKFYGEPLNCLKLWKAVIRLGGYDVVTGSKLWRQVGESFNPPKTCTTVSWTFRIFYEKALLEYEKHKRETGELQLPVGAFHQSPNVEKETTVYQAPGSGRARRDAAARAMQGWHAQRLLGYGEVAEPATKDKNFSSTPKREKNLKSIGMINKQRTPAGLEHAEKAANIEGDRQLVTAVVDIGPPADWVKINVRETKDCFEVYALVPGLLREEVRVQSDPVGRLVITGLPEHIDNPWGITPFKKVVNLPARIDPLQTSAVVSLHGRLFVRVPFEQGAV 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3585g00004 419 Gene3D - 120 218 IPR036431 GO:0003677
Vium3585g00004 419 CDD ARID 121 206 - -
Vium3585g00004 419 SUPERFAMILY HSP20-like chaperones 327 414 IPR008978 -
Vium3585g00004 419 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 318 419 IPR002068 -
Vium3585g00004 419 SMART bright_3 120 211 IPR001606 GO:0003677
Vium3585g00004 419 FunFam AT-rich interactive domain-containing protein 3 119 218 - -
Vium3585g00004 419 Pfam ARID/BRIGHT DNA binding domain 122 206 IPR001606 GO:0003677
Vium3585g00004 419 ProSiteProfiles ARID domain profile. 119 210 IPR001606 GO:0003677
Vium3585g00004 419 Gene3D - 317 418 IPR008978 -
Vium3585g00004 419 SMART ARID_2 116 206 - -
Vium3585g00004 419 FunFam AT-rich interactive domain-containing protein 3 310 418 - -
Vium3585g00004 419 MobiDBLite consensus disorder prediction 1 85 - -
Vium3585g00004 419 SUPERFAMILY ARID-like 107 217 IPR036431 GO:0003677
Vium3585g00004 419 MobiDBLite consensus disorder prediction 57 77 - -
Vium3585g00004 419 MobiDBLite consensus disorder prediction 27 50 - -
Vium3585g00004 419 CDD ACD_sHsps_p23-like 334 413 - -
Vium3585g00004 419 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT 27 416 IPR045147 GO:0006357
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3585g00004 Vium-Chr3585 37517 51581 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3585g00004 28 416 ARID Transcription Factor Family AT1G76510 62.051 2.91e-159 454
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Vium3585g00004 ARID 5.8e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3585g00004 - - gmx:100777965 734.176