Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3576g00001 ATGACAAACAATTCCCCTAAAATCTATGACTTAGACTCTACTTCTTCTCAAGATGAGTACACTAACTCCTCTTCCCAACAAGATCAACCACCACAAGCCGCCACCGCCGATCAACCTCGCACCACCGAATCTGGAAGAAGGCCACGTGGTAGGCCTGTAGGGTCAAGAAACAAGCCAAAACCTACCTCTCTCCGAGTGCCCAAAACCACAGAGTCCACTATGAATGTCTTCACTTTCAATGTGGCTTCAAATGGGGACATCATGGAGTCTATTCTTGAGATTGCACAAAGGGACCAAGTTAGTGTCACTGTTATGAATGTTTCTGGCATGATCAACAACGTGACCCTGGAAGCTTCGAATGAGGGTGCACCACCCATCATTCTCCATGGGCCCTTCAACTTCCTCTCCCTCTCTGGATCCTACTTGTACGACAACCACTACATTCTTCACCCCGGTGCCACCCCTCCCCCTCCCCCATCCTTTGGGATCCATCTCTCCGACGCTCAAGGTCAGGTTTTCAGTGGCATCATTGGTGGCAAAGTCATTGCTGGTGAGAATGTCATGATCACTGTCTCCACATTTAGGAACCCTGACATTTTGATGTACACTCCTGAAGATCAACAAGAGGATGAAACTCACAACGATAGTGATAACAACAGTGCTGGGGATTTCAGTGGGGTTGGCGACTTCATGGGGTTCAACCCAAGTTGTTGA 714 0.4846 MTNNSPKIYDLDSTSSQDEYTNSSSQQDQPPQAATADQPRTTESGRRPRGRPVGSRNKPKPTSLRVPKTTESTMNVFTFNVASNGDIMESILEIAQRDQVSVTVMNVSGMINNVTLEASNEGAPPIILHGPFNFLSLSGSYLYDNHYILHPGATPPPPPSFGIHLSDAQGQVFSGIIGGKVIAGENVMITVSTFRNPDILMYTPEDQQEDETHNDSDNNSAGDFSGVGDFMGFNPSC 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3576g00001 237 SUPERFAMILY AF0104/ALDC/Ptd012-like 72 198 - -
Vium3576g00001 237 MobiDBLite consensus disorder prediction 206 227 - -
Vium3576g00001 237 Gene3D - 74 214 - -
Vium3576g00001 237 Pfam Plants and Prokaryotes Conserved (PCC) domain 76 195 IPR005175 -
Vium3576g00001 237 MobiDBLite consensus disorder prediction 1 71 - -
Vium3576g00001 237 CDD DUF296 75 191 IPR005175 -
Vium3576g00001 237 MobiDBLite consensus disorder prediction 1 41 - -
Vium3576g00001 237 ProSiteProfiles PPC domain profile profile. 71 215 IPR005175 -
Vium3576g00001 237 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 19 215 IPR014476 GO:0003680
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3576g00001 Vium-Chr3576 948 1661 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3576g00001 46 232 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 31.313 7.98e-25 97.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3576g00001 - - vun:114188422 384.8